View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_3 (Length: 554)
Name: NF0553_low_3
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 65 - 554
Target Start/End: Complemental strand, 25218717 - 25218238
Alignment:
| Q |
65 |
atcatcagaattagcaaacggagatgagataaagagatggtcgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25218717 |
atcatcagaattagcaaacggagatgagataaagagatggttgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata |
25218618 |
T |
|
| Q |
165 |
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaagactaaaatcacctacc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25218617 |
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaatactaaaatcacctacc |
25218518 |
T |
|
| Q |
265 |
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25218517 |
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa |
25218418 |
T |
|
| Q |
365 |
gcttgaaatatctacaccaaagtaagacgtttgaac----tattactgcactgacttgtagtgacccaattaccaaaggaattcccatacctatgcacaa |
460 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25218417 |
gcttcaaatatctacaccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattccca------------- |
25218331 |
T |
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| Q |
461 |
gtaagtgatgccaaaccgcttcctcctcacagaggtacatccatctccatatcggtgagcaaagccacgttgaataacaccaaattttgtactc |
554 |
Q |
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|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
25218330 |
-taagggatgccaaaccgcttcctcctcacaaaggtacctccatctccatatcggtgagcaaagccacgttgaataactcctaattttgtactc |
25218238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 65 - 554
Target Start/End: Complemental strand, 25282872 - 25282393
Alignment:
| Q |
65 |
atcatcagaattagcaaacggagatgagataaagagatggtcgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25282872 |
atcatcagaattagcaaacggagatgagataaagagatggttgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata |
25282773 |
T |
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| Q |
165 |
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaagactaaaatcacctacc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25282772 |
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaatactaaaatcacctacc |
25282673 |
T |
|
| Q |
265 |
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25282672 |
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa |
25282573 |
T |
|
| Q |
365 |
gcttgaaatatctacaccaaagtaagacgtttgaac----tattactgcactgacttgtagtgacccaattaccaaaggaattcccatacctatgcacaa |
460 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25282572 |
gcttcaaatatctacaccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattccca------------- |
25282486 |
T |
|
| Q |
461 |
gtaagtgatgccaaaccgcttcctcctcacagaggtacatccatctccatatcggtgagcaaagccacgttgaataacaccaaattttgtactc |
554 |
Q |
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|||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
25282485 |
-taagggatgccaaaccgcttcctcctcacaaaggtacctccatctccatatcggtgagcaaagccacgttgaataactcctaattttgtactc |
25282393 |
T |
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