View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_34 (Length: 285)
Name: NF0553_low_34
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10043806 - 10044028
Alignment:
| Q |
1 |
actattaagaaaatctttctttgacttcttcattttgttgctgctcttcacatttgatccacgtccattatctccacaaaatcttcttaaaaaatcagca |
100 |
Q |
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| T |
10043806 |
actattaagaaaatctttctttgacttatt---------gctgctcttcacatttgatccaggtccattatctccacaaaatctt---aaaaaatcagca |
10043893 |
T |
|
| Q |
101 |
gaatcatcaaaaataaaacggcgaccacacagctccaaattcatcattatttgccaacttttttggttttggagccgtaactattttggttctgtaggtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10043894 |
gaatcatcaaaaataaaacggcgaccacacagctccaaatttatcattatttgccaacttttttggttttggagccgtaactattttggttctgtaggtc |
10043993 |
T |
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| Q |
201 |
tcttttggaacaccattctttgagatcttcttttt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10043994 |
tcttttggaacaccattctttgagatcttcttttt |
10044028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1352843 - 1352750
Alignment:
| Q |
1 |
actattaagaaaatctttctttgacttcttcattttgttgctgctcttcac-----atttg-atccacgtccattatctccacaaaatcttctt |
88 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||| ||||| ||||||||||||||||||||||||| |
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| T |
1352843 |
actattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctt |
1352750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 2040802 - 2040894
Alignment:
| Q |
2 |
ctattaagaaaatctttctttgacttcttcattttgttgctgctcttcac-----atttg-atccacgtccattatctccacaaaatcttctt |
88 |
Q |
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| T |
2040802 |
ctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatccattatctccacaaaatcttctt |
2040894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36717883 - 36717796
Alignment:
| Q |
1 |
actattaagaaaatctttctttgacttcttcattttgttgctgctcttcacatttgatccacgtccattatctccacaaaatcttctt |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||| ||||||||||| |
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| T |
36717883 |
actattaagaaaatctttctttgacttcttcattatgttgctgctcttcacatttgatccaggtccgttgtctccagaaaatcttctt |
36717796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 24619733 - 24619786
Alignment:
| Q |
4 |
attaagaaaatctttctttgacttcttcattttgttgctgctcttcacatttga |
57 |
Q |
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||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
24619733 |
attaagaaaatatttctttgatttcttcattatgttgctgctcttcacatttga |
24619786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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