View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0553_low_37 (Length: 278)

Name: NF0553_low_37
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0553_low_37
NF0553_low_37
[»] chr3 (2 HSPs)
chr3 (68-182)||(15796568-15796682)
chr3 (68-182)||(4324452-4324566)
[»] chr1 (3 HSPs)
chr1 (68-183)||(32645503-32645618)
chr1 (72-185)||(24607615-24607730)
chr1 (91-143)||(51811221-51811273)
[»] chr8 (3 HSPs)
chr8 (68-182)||(31104101-31104215)
chr8 (68-185)||(43603725-43603842)
chr8 (97-134)||(28133715-28133752)
[»] chr4 (5 HSPs)
chr4 (68-182)||(440242-440356)
chr4 (68-185)||(4655948-4656065)
chr4 (68-184)||(3504514-3504630)
chr4 (67-137)||(12200475-12200545)
chr4 (186-238)||(11103475-11103527)
[»] chr5 (2 HSPs)
chr5 (68-185)||(23357025-23357142)
chr5 (68-185)||(32891543-32891659)
[»] chr7 (1 HSPs)
chr7 (68-184)||(23680408-23680524)
[»] chr6 (1 HSPs)
chr6 (68-185)||(2025770-2025888)
[»] chr2 (1 HSPs)
chr2 (89-154)||(39238019-39238084)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 15796568 - 15796682
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15796568 tttttcacggtgcacgctacccaatatcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccg 15796667  T
Q  168 gtattccaaacacat 182  Q
    |||||||||||||||    
T  15796668 gtattccaaacacat 15796682  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 4324566 - 4324452
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4324566 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccg 4324467  T
Q  168 gtattccaaacacat 182  Q
    |||||||||||||||    
T  4324466 gtattccaaacacat 4324452  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 32645503 - 32645618
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||     
T  32645503 tttttcacggtgcacgctatccaatgtcacttttaccgtgattttatgaagctggaaattccaacttttgcctagacgtgcttttttgagctttccaccg 32645602  T
Q  168 gtattccaaacacata 183  Q
    ||||||||||||||||    
T  32645603 gtattccaaacacata 32645618  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 24607615 - 24607730
Alignment:
Q  72 tcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgc--ttttttgagctttccacccgt 169  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||  ||||| |||| ||    
T  24607615 tcacggttcacgcttcccaatgttacttttaccgtgactttatgaagctgaaaattccagcttttgcctagacgtgcgttttttttggctttgcaccggt 24607714  T
Q  170 attccaaacacatact 185  Q
    ||||||||||||||||    
T  24607715 attccaaacacatact 24607730  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 51811221 - 51811273
Alignment:
Q  91 atgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctaga 143  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  51811221 atgtcacttttaccgtgactttatgaagctagaaattccggctttttcctaga 51811273  T

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Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 31104215 - 31104101
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  31104215 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcttagaagtgcttttttgagctttccaccg 31104116  T
Q  168 gtattccaaacacat 182  Q
    |||||||||||||||    
T  31104115 gtattccaaacacat 31104101  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 43603725 - 43603842
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  43603725 tttttcacgatgcacgctatccaatgtcacttttagcgtgattttatgaagctggaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 43603824  T
Q  168 gtattccaaacacatact 185  Q
    ||||| ||||||||||||    
T  43603825 gtatttcaaacacatact 43603842  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 28133715 - 28133752
Alignment:
Q  97 cttttaccgtgattttatgaagctggaaattccagctt 134  Q
    ||||||||||||||||||||||||||||| || |||||    
T  28133715 cttttaccgtgattttatgaagctggaaactctagctt 28133752  T

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Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 440242 - 440356
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  440242 tttttcacggtgcacgctacccaatatcacttttactgtgattttatgaagctggaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 440341  T
Q  168 gtattccaaacacat 182  Q
    |||||||||||||||    
T  440342 gtattccaaacacat 440356  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 4656065 - 4655948
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||     
T  4656065 tttttcacggtgcacgctacataatgtcacttttacagtgattttatgaagctgaaaattccagattttgcctaaaagtgcttttttgagctttccaccg 4655966  T
Q  168 gtattccaaacacatact 185  Q
    ||||||||||||||||||    
T  4655965 gtattccaaacacatact 4655948  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 3504514 - 3504630
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||     
T  3504514 ttttttacggtgcacgctacccaatgtcacttttactatgattttatgaagctgaaaatctcagcttttgcctagaagtgcttttttgagctttccaccg 3504613  T
Q  168 gtattccaaacacatac 184  Q
    |||||||||||||||||    
T  3504614 gtattccaaacacatac 3504630  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 12200545 - 12200475
Alignment:
Q  67 atttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttg 137  Q
    |||||| |||||| ||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12200545 attttttacggtgtacgttttccaatgtcacttttaccgtgactttatgaagctggaaattccagcttttg 12200475  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 11103527 - 11103475
Alignment:
Q  186 gagtggtttaactatttatcactgtgatagggcaatggttaagtttttagtct 238  Q
    |||||||||| | ||||||||||||||||||| |||||||  |||||||||||    
T  11103527 gagtggtttagccatttatcactgtgatagggaaatggttcggtttttagtct 11103475  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 23357025 - 23357142
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||     
T  23357025 tttttcacggtgcacgctacccaatatcacttttactatgattttatgaagctgaaaattccagcttttgcctaaaagtgcttttttgagctttccaccg 23357124  T
Q  168 gtattccaaacacatact 185  Q
    ||||||||||||||||||    
T  23357125 gtattccaaacacatact 23357142  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 32891543 - 32891659
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagt-gcttttttgagctttccacc 166  Q
    |||||||||||||||| |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |||||| ||||    
T  32891543 tttttcacggtgcacgttttccaatgtc--ttttaccgtgattttatgaagctggaaattccagcttttgcctaaacgtgggtttttttagctttgcacc 32891640  T
Q  167 cgtattccaaacacatact 185  Q
     ||||||||||||||||||    
T  32891641 ggtattccaaacacatact 32891659  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 23680524 - 23680408
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgcttttttgagctttccaccc 167  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||| || ||||||||| |||||||||     
T  23680524 ttttttacggtgcacgctacccaatgtcacttttatcgtgattttatgaagctggaaattctaacttttacctagacgtacttttttgaactttccacca 23680425  T
Q  168 gtattccaaacacatac 184  Q
    |||||||||||||||||    
T  23680424 gtattccaaacacatac 23680408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 2025770 - 2025888
Alignment:
Q  68 tttttcacggtgcacgctacccaatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtg-cttttttgagctttccacc 166  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||| |||||||| |||| |||  ||||||||||||||||||    
T  2025770 tttttcacggtgcacgttactcaatatcacttttactgtgattttatgaagctggaaattcctgcttttgcttagacgtgttttttttgagctttccacc 2025869  T
Q  167 cgtattccaaacacatact 185  Q
     ||||||||||||||||||    
T  2025870 ggtattccaaacacatact 2025888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 39238019 - 39238084
Alignment:
Q  89 caatgtcacttttaccgtgattttatgaagctggaaattccagcttttgcctagaagtgctttttt 154  Q
    |||||| ||||||||||||| |||||||||||| |||| |||||||||||||||| |||| |||||    
T  39238019 caatgtgacttttaccgtgactttatgaagctgaaaataccagcttttgcctagacgtgcattttt 39238084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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