View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_39 (Length: 269)
Name: NF0553_low_39
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_39 |
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| [»] chr2 (11 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 8367994 - 8368262
Alignment:
| Q |
1 |
ttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctttgttcttcatcttcttctaatatattctcttgaattgaactttccat |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367994 |
ttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttctctttgttcttcatcttcttctaatatattctcttgaattgaactttccat |
8368093 |
T |
|
| Q |
101 |
catttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368094 |
catttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcc |
8368193 |
T |
|
| Q |
201 |
ataacaggaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtg |
269 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368194 |
ataacaggtactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtg |
8368262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 8422993 - 8422725
Alignment:
| Q |
1 |
ttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctttgttcttcatcttcttctaatatattctcttgaattgaactttccat |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422993 |
ttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttctctttgttcttcatcttcttctaatatattctcttgaattgaactttccat |
8422894 |
T |
|
| Q |
101 |
catttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422893 |
catttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcc |
8422794 |
T |
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| Q |
201 |
ataacaggaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtg |
269 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422793 |
ataacaggtactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtg |
8422725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 8401416 - 8401148
Alignment:
| Q |
1 |
ttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctttgttcttcatcttcttctaatatattctcttgaattgaactttccat |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401416 |
ttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctctttgttcttcatcttcttctaatatattctcttgaattgaactttccat |
8401317 |
T |
|
| Q |
101 |
catttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401316 |
catttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcc |
8401217 |
T |
|
| Q |
201 |
ataacaggaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtg |
269 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401216 |
ataacaggtactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtg |
8401148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 8411863 - 8411934
Alignment:
| Q |
121 |
aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatg |
192 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
8411863 |
aagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatg |
8411934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 8433961 - 8434032
Alignment:
| Q |
121 |
aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatg |
192 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
8433961 |
aagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatg |
8434032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 265
Target Start/End: Complemental strand, 8376156 - 8375999
Alignment:
| Q |
108 |
aagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagccataacag |
207 |
Q |
| |
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||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||| |||||||| ||||||| || || |
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| T |
8376156 |
aagaaaccaccagaagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaattacagaagccaatgaaccagccaaaagag |
8376057 |
T |
|
| Q |
208 |
gaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattcc |
265 |
Q |
| |
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|||| | || ||||| ||||| ||| |||||||| || || | |||||||||||| |
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| T |
8376056 |
gaacaaaagcagccaaagaaccactacctacaaatgtcgatccaatagctgcaattcc |
8375999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 8416952 - 8417024
Alignment:
| Q |
129 |
tacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca |
201 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||||||| |
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| T |
8416952 |
tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaactgcagaagccaatgaaccagcca |
8417024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 8431014 - 8431070
Alignment:
| Q |
121 |
aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaa |
177 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
8431014 |
aagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa |
8431070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 8405743 - 8405823
Alignment:
| Q |
121 |
aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca |
201 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| | |||| |||||||| ||||||| |
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| T |
8405743 |
aagctctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagcca |
8405823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 8403777 - 8403856
Alignment:
| Q |
111 |
aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa |
190 |
Q |
| |
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| T |
8403777 |
aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa |
8403856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 8395829 - 8395749
Alignment:
| Q |
121 |
aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca |
201 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||||||||||| ||||||| ||| | |||| |||||||| ||||||| |
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| T |
8395829 |
aagctctatacatttcaaaaaccatgccaatttgtccaccatgttcaaaagtatttattgcagaagccaatgaaccagcca |
8395749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 55336092 - 55336151
Alignment:
| Q |
111 |
aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa |
170 |
Q |
| |
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||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
55336092 |
aatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa |
55336151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 55330659 - 55330720
Alignment:
| Q |
110 |
gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag |
171 |
Q |
| |
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||||||||||||| ||||||||||||| | |||||||||| |||||||||||| ||||||| |
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| T |
55330659 |
gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag |
55330720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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