View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_5 (Length: 493)
Name: NF0553_low_5
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 222 - 456
Target Start/End: Complemental strand, 44742039 - 44741803
Alignment:
| Q |
222 |
ctcaattaccacatgtgtccatcgaagataccaggagtactctttattagaaccataaatgctatgaatannnnnnnaatattctctttaacactcactc |
321 |
Q |
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| T |
44742039 |
ctcaattaccacatgtgtccagcgaagatactaggagtactctttattagaaccataaatgctatgaatatttttttaatattctctttaacactcattc |
44741940 |
T |
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| Q |
322 |
ttttataattggtgtaaaacttatatgagtttcacacattaaaaataaatcatatgtaaagtgatgaaact--cataagttttatcatataagataataa |
419 |
Q |
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| T |
44741939 |
ttttataattggtgtaaaacttatatgagtttcacacattaaaaataaatcatatgtaaagtgatgaaacttatataagttttatcatataagataataa |
44741840 |
T |
|
| Q |
420 |
taagtgatagaaaatgtcttaaaacgagagtgttctc |
456 |
Q |
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| T |
44741839 |
taagtgatagaaaatgtcttaaaatgagagtgttctc |
44741803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 44742245 - 44742148
Alignment:
| Q |
13 |
aatattagtcgtttaaggtttgagtttaattcttaaatttgtgtcttggttttaatatactatatcaatataaatgaatgaatgttgtttctttttgt |
110 |
Q |
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| T |
44742245 |
aatattagtcgtttaaggtttgagtttaattcttaaatttgtgtcttggttttaatatactatatcaatgtaaatgaatgaatgttgtttctttttgt |
44742148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 33852303 - 33852335
Alignment:
| Q |
62 |
ttttaatatactatatcaatataaatgaatgaa |
94 |
Q |
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| T |
33852303 |
ttttaatatactatatcaatttaaatgaatgaa |
33852335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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