View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_52 (Length: 233)
Name: NF0553_low_52
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38920914 - 38920698
Alignment:
| Q |
1 |
atctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataa---cttattcatacctcannnnnnnac |
97 |
Q |
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| T |
38920914 |
atctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataataacttattcatacctcatttttttac |
38920815 |
T |
|
| Q |
98 |
atggattgttgagaatccacttatctccggcccgaagaacgttgtgtagatccaattgaaacgcgtttgtgcaggttcataatccgaagacggacgaggt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38920814 |
atggattgttgagaatccacttatctccggcccgaagaacatcgtgtagatccaattgaaacgcgtttgtgcaggttcataatccgaagacggacgaggt |
38920715 |
T |
|
| Q |
198 |
ctgcgatggtagctgat |
214 |
Q |
| |
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||||||||||||||||| |
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| T |
38920714 |
ctgcgatggtagctgat |
38920698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 10544787 - 10544653
Alignment:
| Q |
3 |
ctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataacttattcatacctcannnnnnnacatgga |
102 |
Q |
| |
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||||| ||||| ||||||||||| || |||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||| |
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| T |
10544787 |
ctactaaaacatgcatccagatgacttcataacaaacaaatgtttatggtcggaaaattaacaataaataacttattcatacctca-ttttttacatgga |
10544689 |
T |
|
| Q |
103 |
ttgttgagaatccacttatctccggcccgaagaacgt |
139 |
Q |
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||||||||||||||| | |||||||||| ||||||| |
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| T |
10544688 |
ttgttgagaatccac-cacctccggcccgtagaacgt |
10544653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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