View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_60 (Length: 208)
Name: NF0553_low_60
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 25167941 - 25168130
Alignment:
| Q |
1 |
ttcttaaggcaagatacgggactttaaccccgtcccctcatcttggggaaaatccaggggtcttcggtaggtagactttacagtggaggcgattaggttt |
100 |
Q |
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| T |
25167941 |
ttcttaagacaagatacgggactttaaccccgtctcctcatcttggggaaaatccagaggtctttggtaggtagactttacagtggaggcgattaggttt |
25168040 |
T |
|
| Q |
101 |
atctcttttcttctgggaggtggaattggtatctgagcttctccggttactaccttaggtagggttctaggagagactggatgtttgatg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
25168041 |
atctcttttcttctgggaggtggaattggtatctgagcttcttcggttactaccttaagtagggttctaggagagactagatgtttgatg |
25168130 |
T |
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