View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_61 (Length: 206)
Name: NF0553_low_61
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 35293447 - 35293631
Alignment:
| Q |
1 |
ttttctttgaaataaaacaaaggggttatagtcattttcatccatgaatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatag |
100 |
Q |
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| T |
35293447 |
ttttctttgaaataaaataaaaggattatagtaattttcatccatgaatgtttaatagatagccgtaatagcctcttactgtattgaaattataaaatag |
35293546 |
T |
|
| Q |
101 |
ttattgattgtccattttattatttgagtgtatattttcagttgcatttacattacatttagttaattacaagttactgatgatg |
185 |
Q |
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| T |
35293547 |
ttattaattgtacattttattatttgagtgtatattttcagttgcatttacattacatttagttaattacaagttacttatgatg |
35293631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 28585008 - 28584946
Alignment:
| Q |
122 |
atttgagtgtatattttcagttgcatttacattacatttagttaattacaagttactgatgatg |
185 |
Q |
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| T |
28585008 |
atttgagtgtaaattt-caattgcatttacattacatttagtttgttacaagttagttatgatg |
28584946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 8407300 - 8407219
Alignment:
| Q |
28 |
atagtcattttcatccatgaatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgatt |
109 |
Q |
| |
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|||||||||||||||||| ||||| |||| |||| || || ||| ||| | |||||| ||||| |||||||||||||||| |
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| T |
8407300 |
atagtcattttcatccataaatgtgtaacgaataaccatattagtttctgaatgtatcaaaattttaaaatagttattgatt |
8407219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 2519076 - 2519027
Alignment:
| Q |
136 |
tttcagttgcatttacattacatttagttaattacaagttactgatgatg |
185 |
Q |
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||||||||||||||| |||||||||||||| ||| |||||| | |||||| |
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| T |
2519076 |
tttcagttgcatttagattacatttagttagttataagttagttatgatg |
2519027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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