View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0553_low_8 (Length: 415)
Name: NF0553_low_8
Description: NF0553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0553_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 16050439 - 16050745
Alignment:
| Q |
13 |
aatataatcaacttcaaatatgactctgtatgaacagaactcatacttaaccaaacaataagtttcttttatacgagaatagatttcttaagcatctagg |
112 |
Q |
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| T |
16050439 |
aatataatcaacttcaaatatgactttgtatgaacagaactcatacttaaccaaacaataagtttcttttatacgagaatagatttcttaagcatctagg |
16050538 |
T |
|
| Q |
113 |
atgagaatttatcatattacaggagtctgttcagagaggttgtatgaatcacttatttcattggtttcaagcaaagttcaactcaagttactgtaatgaa |
212 |
Q |
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| T |
16050539 |
atgagaatttatcatattacaggagtctgttcagagaggttgtatgaatcacttatttcattggtttcaagc-aagttcaactcaagttactgtaatgaa |
16050637 |
T |
|
| Q |
213 |
acttgatttccagaaaccaggggagtgtaatgtgtacccaatgaaaacaaaaccattagtgagatataattataattatttagatacatacacacaaata |
312 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16050638 |
acttgatttccagaaaccaggggagtgtaatgtctacccaatgaaaacaaaaccattagagagatataattataattatttagatacatacacacaaata |
16050737 |
T |
|
| Q |
313 |
gtccagtg |
320 |
Q |
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| T |
16050738 |
gtccagtg |
16050745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 37598712 - 37598752
Alignment:
| Q |
208 |
atgaaacttgatttccagaaaccaggggagtgtaatgtgta |
248 |
Q |
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|||||||||||||| |||||||| || |||||||||||||| |
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| T |
37598712 |
atgaaacttgattttcagaaaccgggtgagtgtaatgtgta |
37598752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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