View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0554_high_3 (Length: 311)

Name: NF0554_high_3
Description: NF0554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0554_high_3
NF0554_high_3
[»] chr4 (4 HSPs)
chr4 (122-284)||(15879416-15879578)
chr4 (1-119)||(15567008-15567129)
chr4 (1-119)||(15579653-15579774)
chr4 (3-58)||(18216542-18216597)
[»] scaffold0770 (2 HSPs)
scaffold0770 (126-284)||(1469-1626)
scaffold0770 (2-55)||(1760-1812)
[»] scaffold0029 (4 HSPs)
scaffold0029 (126-284)||(99773-99930)
scaffold0029 (2-71)||(21049-21116)
scaffold0029 (2-71)||(34790-34857)
scaffold0029 (2-55)||(100064-100116)
[»] chr8 (2 HSPs)
chr8 (122-284)||(24487277-24487439)
chr8 (1-67)||(15708054-15708120)
[»] scaffold0503 (2 HSPs)
scaffold0503 (122-284)||(1256-1431)
scaffold0503 (122-284)||(5823-5998)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-119)||(4557-4678)
[»] chr6 (5 HSPs)
chr6 (1-119)||(15665424-15665546)
chr6 (2-61)||(16324643-16324702)
chr6 (2-59)||(18964629-18964686)
chr6 (179-243)||(18437332-18437396)
chr6 (2-59)||(20531761-20531819)
[»] scaffold0077 (1 HSPs)
scaffold0077 (122-210)||(315-403)
[»] scaffold0484 (1 HSPs)
scaffold0484 (1-119)||(10696-10816)
[»] chr1 (2 HSPs)
chr1 (1-67)||(2335139-2335205)
chr1 (179-228)||(13186321-13186370)
[»] scaffold0755 (1 HSPs)
scaffold0755 (2-67)||(1794-1859)
[»] chr7 (12 HSPs)
chr7 (2-59)||(15684594-15684651)
chr7 (2-67)||(42630345-42630410)
chr7 (2-67)||(8810913-8810978)
chr7 (2-67)||(8818727-8818792)
chr7 (2-67)||(9461436-9461501)
chr7 (2-67)||(9475194-9475259)
chr7 (2-67)||(16387566-16387631)
chr7 (2-67)||(16401693-16401758)
chr7 (122-177)||(42017132-42017187)
chr7 (2-67)||(30364113-30364178)
chr7 (2-67)||(30378178-30378243)
chr7 (81-119)||(36899197-36899235)
[»] chr3 (13 HSPs)
chr3 (2-67)||(21608292-21608357)
chr3 (2-67)||(21616920-21616985)
chr3 (2-119)||(19834215-19834335)
chr3 (2-61)||(46372128-46372187)
chr3 (2-61)||(46386255-46386314)
chr3 (2-59)||(15528075-15528132)
chr3 (3-59)||(46392468-46392524)
chr3 (3-59)||(46400216-46400272)
chr3 (2-59)||(15536764-15536821)
chr3 (2-58)||(5650848-5650904)
chr3 (179-243)||(14252925-14252989)
chr3 (2-57)||(15924257-15924312)
chr3 (2-59)||(15609565-15609622)
[»] chr5 (12 HSPs)
chr5 (3-59)||(26552351-26552407)
chr5 (3-119)||(29885459-29885577)
chr5 (2-61)||(36370318-36370377)
chr5 (1-71)||(7254205-7254273)
chr5 (1-71)||(7261647-7261715)
chr5 (2-61)||(36994981-36995040)
chr5 (2-61)||(37008919-37008978)
chr5 (2-59)||(25449672-25449729)
chr5 (3-119)||(29902035-29902153)
chr5 (3-59)||(23576589-23576645)
chr5 (17-61)||(36384261-36384305)
chr5 (2-59)||(25676874-25676931)
[»] scaffold0067 (1 HSPs)
scaffold0067 (2-67)||(43672-43737)
[»] scaffold0815 (1 HSPs)
scaffold0815 (3-57)||(4215-4269)
[»] scaffold1575 (1 HSPs)
scaffold1575 (2-59)||(917-974)
[»] chr2 (5 HSPs)
chr2 (2-59)||(39650514-39650571)
chr2 (4-59)||(22935160-22935215)
chr2 (4-59)||(22941124-22941179)
chr2 (4-59)||(22955019-22955074)
chr2 (1-57)||(21069126-21069182)
[»] scaffold1271 (1 HSPs)
scaffold1271 (3-59)||(1019-1075)
[»] scaffold0269 (1 HSPs)
scaffold0269 (6-59)||(13731-13784)
[»] scaffold0182 (1 HSPs)
scaffold0182 (3-71)||(6156-6222)
[»] scaffold0435 (1 HSPs)
scaffold0435 (3-59)||(7563-7619)
[»] scaffold0034 (1 HSPs)
scaffold0034 (3-59)||(118645-118701)
[»] scaffold1855 (1 HSPs)
scaffold1855 (3-71)||(261-327)
[»] scaffold0362 (1 HSPs)
scaffold0362 (2-59)||(3809-3866)
[»] scaffold0101 (2 HSPs)
scaffold0101 (122-177)||(15923-15976)
scaffold0101 (2-38)||(15735-15771)
[»] scaffold1761 (1 HSPs)
scaffold1761 (3-58)||(574-629)
[»] scaffold0094 (1 HSPs)
scaffold0094 (2-57)||(29795-29850)
[»] scaffold0422 (1 HSPs)
scaffold0422 (3-55)||(5671-5723)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 15879416 - 15879578
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 221  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||    
T  15879416 acctttggatgaacccggttgtttgctgttgtttgtgacgacaacgaatgtgttgtagttgtggttggtgacgactctgtgatgtgtccggtttggaagt 15879515  T
Q  222 gcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 284  Q
    ||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  15879516 gcggcttcgagttgatgttgttccttagtgatgtgcgattctggcttcttgtgtttcctctgt 15879578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15567008 - 15567129
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt---annnnnnnnggttccttctacttgtt 97  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||   |        |||||||||||||||||    
T  15567008 tggggtttcggcggcagttggccggccagtgtggcggcaccaccgcgccggaaccctaacaacttatttttttgatttttttcggttccttctacttgtt 15567107  T
Q  98 cttttctcctctactcgattct 119  Q
    ||||||||||||||||||||||    
T  15567108 cttttctcctctactcgattct 15567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15579653 - 15579774
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt---annnnnnnnggttccttctacttgtt 97  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||   |        |||||||||||||||||    
T  15579653 tggggttccggcggcagttggtcggccagtgcggcggcaccatcgcgccggaaccctaacaacttatttttttgattttttttggttccttctacttgtt 15579752  T
Q  98 cttttctcctctactcgattct 119  Q
    ||||||||||||||||||||||    
T  15579753 cttttctcctctactcgattct 15579774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 18216597 - 18216542
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 58  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||    
T  18216597 gggttccggcggcggttggtcggccggtgcggcgacaccaccgtgccggaacccta 18216542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 126 - 284
Target Start/End: Complemental strand, 1626 - 1469
Alignment:
Q  126 ttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcgg 225  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
T  1626 ttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtctggtttggaagtgcgg 1527  T
Q  226 ctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 284  Q
    |||  |||| |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  1526 cttcaagttgatgttgttccttagtgatgtgcgattctggctt-ttgtgtttcctctgt 1469  T

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Target: scaffold0770; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 1812 - 1760
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 55  Q
    |||||||||||||||||||||||||| || |||||||  |||| ||||||||||    
T  1812 ggggttccggcggcagttggccggccggtacggcggc-gcaccacgccggaacc 1760  T

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Target: scaffold0029 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 126 - 284
Target Start/End: Complemental strand, 99930 - 99773
Alignment:
Q  126 ttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcgg 225  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
T  99930 ttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtctggtttggaagtgcgg 99831  T
Q  226 ctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 284  Q
    |||  |||| |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  99830 cttcaagttgatgttgttccttagtgatgtgcgattctggctt-ttgtgtttcctctgt 99773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 21116 - 21049
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 71  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  21116 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaacccta--aacttatattt 21049  T

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Target: scaffold0029; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 34857 - 34790
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 71  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  34857 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaacccta--aacttatattt 34790  T

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Target: scaffold0029; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 100116 - 100064
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 55  Q
    |||||||||||||||||||||||||| || |||||||  |||| ||||||||||    
T  100116 ggggttccggcggcagttggccggccggtacggcggc-gcaccacgccggaacc 100064  T

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Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 24487277 - 24487439
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtccagtttggaagt 221  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||| ||||||  ||||||| ||    
T  24487277 acctttggatgaacccggttgtttgttgttgtttgtgacggcaacggatgtgttgtggttgtggttggtgacggttctgtgatgtgtctggtttggaggt 24487376  T
Q  222 gcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 284  Q
    || |||| ||||| |||||||| ||||| ||||||||||| ||| ||||||||||||||||||    
T  24487377 gcagcttcgagttgatgttgttccttagggatgtgcgattctggattcttgtgtttcctctgt 24487439  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15708120 - 15708054
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  15708120 tggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 15708054  T

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Target: scaffold0503 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 1256 - 1431
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgt-------------gt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||             ||    
T  1256 acctttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtccggtttggaagt 1355  T
Q  209 ccagtttggaagtgcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 284  Q
    || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  1356 ccggtttggaagtgcagcttcgagttgatgttgttccttagtgatgtgcgattctggcttcttgtgtttcttctgt 1431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 5823 - 5998
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgt-------------gt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||             ||    
T  5823 acctttggatgaacccggttgtttgctgttgtttgtgacggcaacggatgtgttgtagttgtggttggtgacggttctgtgatgtgtccggtttggaagt 5922  T
Q  209 ccagtttggaagtgcggctttgagttaatgttgtttcttagtgatgtgcgattttggcttcttgtgtttcctctgt 284  Q
    || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  5923 ccggtttggaagtgcagcttcgagttgatgttgttccttagtgatgtgcgattctggcttcttgtgtttcttctgt 5998  T

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Target: scaffold0014 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4678 - 4557
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta---tatttannnnnnnnggttccttctacttgtt 97  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   | |||         |||||||||||||||||    
T  4678 tggggttccggcggcagttggccggccagcgcggcggcaccaccgcgccggagccctaacaacttatttttttttttttttttggttccttctacttgtt 4579  T
Q  98 cttttctcctctactcgattct 119  Q
    ||||||||||||||||||||||    
T  4578 cttttctcctctactcgattct 4557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15665424 - 15665546
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatatt----tannnnnnnnggttccttctacttgt 96  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||    |         ||||||||||||||||    
T  15665424 tggggttccggcggcagttggccggccagcgcggcggcaccaccgcgccggagccctaacaacttattttttgattttttttttggttccttctacttgt 15665523  T
Q  97 tcttttctcctctactcgattct 119  Q
    |||||||||||||||||||||||    
T  15665524 tcttttctcctctactcgattct 15665546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 16324643 - 16324702
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  16324643 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 16324702  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 18964629 - 18964686
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  18964629 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 18964686  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 18437396 - 18437332
Alignment:
Q  179 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctttgagttaatgttgtt 243  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| ||||||||| ||||| ||||||||    
T  18437396 gttgtggttggtgacggttatgtgatgtgtccggtttggacgtgcggcttcgagttgatgttgtt 18437332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 20531761 - 20531819
Alignment:
Q  2 ggggttccggcggcagttggccgg-ccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||  ||||||||| || ||||| ||||||| |||||||||||||||||    
T  20531761 ggggttccggcggtggttggccgggccggtgcgacggcacctccgcgccggaaccctaa 20531819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 403 - 315
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgtagttgtggttggcgacggttctgtggtgtgtcc 210  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  403 acctttggatgaacttggttgtttgctgttgtttgtgacggcaacagatgtgttgtagttgtggttggtgacggctctgtgatgtgtcc 315  T

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Target: scaffold0484 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10696 - 10816
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt--annnnnnnnggttccttctacttgttc 98  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||  |        ||||| ||||||||||||    
T  10696 tggggttccggcggcggttggcctgccagtgcggcggcaccaccgcgccggaaccctaacaacttattttttaaatttttttggttctttctacttgttc 10795  T
Q  99 ttttctcctctactcgattct 119  Q
    ||| ||||| |||||||||||    
T  10796 tttcctcctatactcgattct 10816  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2335139 - 2335205
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  2335139 tggggttccggcggcggttggccggccagtgtggcggcaccaccgcgccggaaccctaccaacttat 2335205  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 13186370 - 13186321
Alignment:
Q  179 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctt 228  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  13186370 gttgtggttggtgacggttctgtgatgtgtccggtttggaagtgcggctt 13186321  T

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Target: scaffold0755 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 1859 - 1794
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1859 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 1794  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 15684651 - 15684594
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15684651 ggggttccggcggcggttggccggccagtgcggcggcaccaccgcgccggaaccctaa 15684594  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 42630345 - 42630410
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42630345 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 42630410  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8810978 - 8810913
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  8810978 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 8810913  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8818792 - 8818727
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  8818792 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 8818727  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 9461501 - 9461436
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  9461501 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 9461436  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 9475259 - 9475194
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  9475259 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 9475194  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 16387566 - 16387631
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  16387566 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 16387631  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 16401693 - 16401758
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  16401693 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacagcttat 16401758  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 42017132 - 42017187
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgt 177  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  42017132 acctttggatgaacccggttgcttgctgttgtttgtgacggcaacagatgtgttgt 42017187  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30364113 - 30364178
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  30364113 ggggttccggcggtggttggccggccagcgcggcggcgccaccgcgccggaaccctaacagcttat 30364178  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30378178 - 30378243
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||| |||||    
T  30378178 ggggttccggcggtggttggccggccagcgcggcggcgccaccgcgccggaaccctaacagcttat 30378243  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 36899235 - 36899197
Alignment:
Q  81 ggttccttctacttgttcttttctcctctactcgattct 119  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  36899235 ggttctttctacttgttctcttctcctctactcgattct 36899197  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21608357 - 21608292
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21608357 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 21608292  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21616985 - 21616920
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21616985 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaacaacttat 21616920  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 19834335 - 19834215
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta---tatttannnnnnnnggttccttctacttgttc 98  Q
    |||||||||||||| | ||||||||| ||| |||||| |||||| ||||||||||||||||||||   | |||         ||||||||||||||||||    
T  19834335 ggggttccggcggcggctggccggccggtgaggcggcgccaccgtgccggaaccctaacaacttattttttttggtttttttggttccttctacttgttc 19834236  T
Q  99 ttttctcctctactcgattct 119  Q
    |||||||||||||||||||||    
T  19834235 ttttctcctctactcgattct 19834215  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 46372187 - 46372128
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  46372187 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 46372128  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 46386314 - 46386255
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  46386314 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 46386255  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 15528075 - 15528132
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  15528075 ggggttccggcggcagttggccagccggtgcggcggcgccaccgtgccggaaccctaa 15528132  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 46392468 - 46392524
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  46392468 gggttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 46392524  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 46400216 - 46400272
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    ||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  46400216 gggttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 46400272  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 15536764 - 15536821
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||| ||||||| ||| |||||||||| |||||| |||||||||||||    
T  15536764 ggggttccggcggcggttggccagccggtgcggcggcgccaccgtgccggaaccctaa 15536821  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 5650848 - 5650904
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 58  Q
    |||||||||||||| | ||||||||| |||||||||| | |||||||||||||||||    
T  5650848 ggggttccggcggcggctggccggccggtgcggcggcgctaccgcgccggaacccta 5650904  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 14252989 - 14252925
Alignment:
Q  179 gttgtggttggcgacggttctgtggtgtgtccagtttggaagtgcggctttgagttaatgttgtt 243  Q
    ||||||||||| ||| |||||||| ||||||| |||||||||||||| || ||||| ||||||||    
T  14252989 gttgtggttggtgacagttctgtgatgtgtccggtttggaagtgcggattcgagttgatgttgtt 14252925  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 15924312 - 15924257
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 57  Q
    |||||||||||||| | ||||||||| |||||||||| |||||| |||||||||||    
T  15924312 ggggttccggcggcggctggccggccggtgcggcggcgccaccgtgccggaaccct 15924257  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 15609565 - 15609622
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||| ||| | ||||||||| |||||||||| |||||| |||||||||||||    
T  15609565 ggggttccggtggcggctggccggccggtgcggcggcgccaccgtgccggaaccctaa 15609622  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 26552351 - 26552407
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  26552351 gggttccggcggcggttggccggccggtgcggcggcaccaccgcgccggaaccctaa 26552407  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 29885577 - 29885459
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaactta--tatttannnnnnnnggttccttctacttgttctt 100  Q
    ||||||||| ||| ||||||| ||| ||| |||||| |||||||||||||||||||||||||||  | |||         |||||||||||||||||||     
T  29885577 gggttccggtggcggttggccagcctgtggggcggcgccaccgcgccggaaccctaacaacttatttttttgatttttttggttccttctacttgttctc 29885478  T
Q  101 ttctcctctactcgattct 119  Q
    |||||||||||||||||||    
T  29885477 ttctcctctactcgattct 29885459  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 36370318 - 36370377
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  36370318 ggggttccggcggtggttggccggccagtgcggcggcgccaccgcgccggaaccctaaca 36370377  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7254205 - 7254273
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 71  Q
    ||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  7254205 tggggttccggcggtggttggccggccagtgcggcggcgccaccgtgccggaacccta--aacttatattt 7254273  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7261647 - 7261715
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 71  Q
    ||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  7261647 tggggttccggcggtggttggccggccagtgcggcggcgccaccgtgccggaacccta--aacttatattt 7261715  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 36994981 - 36995040
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||    
T  36994981 ggggttccggcggtggttggccggctagtgcggcggcgccaccgcgccggaaccctaaca 36995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 37008919 - 37008978
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    |||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||||    
T  37008919 ggggttccggcggtggttggccggctagtgcggcggcgccaccgcgccggaaccctaaca 37008978  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 25449672 - 25449729
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  25449672 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 25449729  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 29902153 - 29902035
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatatttannnnnnnn--ggttccttctacttgttctt 100  Q
    ||||||||| ||| ||||||  ||  ||| |||||| |||||||||||||||||||||||||||| |||           |||||||||||||||||||     
T  29902153 gggttccggtggcggttggctagcttgtggggcggcgccaccgcgccggaaccctaacaacttatttttttgatttttttggttccttctacttgttctc 29902054  T
Q  101 ttctcctctactcgattct 119  Q
    |||||||||||||||||||    
T  29902053 ttctcctctactcgattct 29902035  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 23576589 - 23576645
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||| || |||||||| || || ||||||||||||||||||||||||||||    
T  23576589 gggttccggcagcggttggccgaccggtacggcggcaccaccgcgccggaaccctaa 23576645  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 36384261 - 36384305
Alignment:
Q  17 gttggccggccagtgcggcggcaccaccgcgccggaaccctaaca 61  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  36384261 gttggacggccagttcggcggcgccaccgcgccggaaccctaaca 36384305  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 25676874 - 25676931
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||| | | | ||||||||| || |||||||||| |||||||||||||||||    
T  25676874 ggggttccggtgacggctggccggccggtacggcggcacctccgcgccggaaccctaa 25676931  T

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Target: scaffold0067 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 43672 - 43737
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttat 67  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||| ||||    
T  43672 ggggttccggcggcggttggccggccggtgcggcggcaccaccgcgtcggaaccctatcaatttat 43737  T

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Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 4215 - 4269
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 57  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  4215 gggttccggcggcggttggccggccggtgcggcggcgccaccgcgccggaaccct 4269  T

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Target: scaffold1575 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 974 - 917
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  974 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 917  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 39650571 - 39650514
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  39650571 ggggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 39650514  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 22935215 - 22935160
Alignment:
Q  4 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  22935215 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22935160  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 22941179 - 22941124
Alignment:
Q  4 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  22941179 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22941124  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 22955074 - 22955019
Alignment:
Q  4 ggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||    
T  22955074 ggttccggcggtggttggccggccagtgcggcggcgccaccacgccggaaccctaa 22955019  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21069182 - 21069126
Alignment:
Q  1 tggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 57  Q
    ||||||||||||||| ||||||||  | || ||||||| ||||||||||||||||||    
T  21069182 tggggttccggcggcggttggccgatcggtacggcggcgccaccgcgccggaaccct 21069126  T

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Target: scaffold1271 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 1019 - 1075
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||    
T  1019 gggttccggcggaggttggccggccggtgcggcggcaccaccgtgccggaaccctaa 1075  T

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Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 13731 - 13784
Alignment:
Q  6 ttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  13731 ttccggcggcggttggccggccggtgcggcggcgccaccacgccggaaccctaa 13784  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 6222 - 6156
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 71  Q
    ||||||||||||| ||||||||||| |||||||||| |||||| ||| ||||||||  |||||||||||    
T  6222 gggttccggcggcggttggccggccggtgcggcggcgccaccgtgccagaacccta--aacttatattt 6156  T

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Target: scaffold0435 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 7563 - 7619
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    ||||||||||||| |||||||| || || ||||||||||||| ||||||||||||||    
T  7563 gggttccggcggcggttggccgaccggtacggcggcaccaccacgccggaaccctaa 7619  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 118645 - 118701
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||| | |||| ||||||||||| || ||||||||||||||||||||||||||||    
T  118645 gggttctgacggcggttggccggccggtacggcggcaccaccgcgccggaaccctaa 118701  T

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Target: scaffold1855 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 327 - 261
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaacaacttatattt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||||||||| ||  |||||||||||    
T  327 gggttccggcgacggttggccggccggtgcggcggcgccaccgtgccggaacctta--aacttatattt 261  T

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Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 3809 - 3866
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccctaa 59  Q
    |||||||||| ||| | ||||||||| || |||||||||| |||||||||||||||||    
T  3809 ggggttccggtggcggctggccggccggtacggcggcacctccgcgccggaaccctaa 3866  T

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Target: scaffold0101 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 15923 - 15976
Alignment:
Q  122 acctttggatgaacccggttgtttgctgttgtttgcgacggcaacagatgtgttgt 177  Q
    |||||||||||||||||||||  |||||||||||| |||||| || ||||||||||    
T  15923 acctttggatgaacccggttg--tgctgttgtttgtgacggccacggatgtgttgt 15976  T

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Target: scaffold0101; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 15735 - 15771
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggc 38  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  15735 ggggttccggcggcggttggccggccggtgcggcggc 15771  T

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Target: scaffold1761 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 574 - 629
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacccta 58  Q
    ||||||||||||  |||||||| || |||||||||| |||||||| ||||||||||    
T  574 gggttccggcggtggttggccgaccggtgcggcggcgccaccgcgtcggaacccta 629  T

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Target: scaffold0094 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 29795 - 29850
Alignment:
Q  2 ggggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaaccct 57  Q
    |||||||||||||| | ||||||||| |||||||||| || ||| |||||||||||    
T  29795 ggggttccggcggcggctggccggccggtgcggcggcgccgccgtgccggaaccct 29850  T

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Target: scaffold0422 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 5671 - 5723
Alignment:
Q  3 gggttccggcggcagttggccggccagtgcggcggcaccaccgcgccggaacc 55  Q
    |||||| |||||| ||||||||||| |||| |||||||| ||||| |||||||    
T  5671 gggttctggcggcggttggccggccggtgcagcggcaccgccgcgtcggaacc 5723  T

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