View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0554_low_10 (Length: 268)

Name: NF0554_low_10
Description: NF0554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0554_low_10
NF0554_low_10
[»] chr3 (6 HSPs)
chr3 (30-213)||(2206748-2206932)
chr3 (64-217)||(3656207-3656366)
chr3 (64-136)||(29351300-29351374)
chr3 (64-136)||(38891188-38891262)
chr3 (161-217)||(20520948-20521008)
chr3 (161-194)||(18473020-18473053)
[»] scaffold0011 (1 HSPs)
scaffold0011 (64-194)||(64845-64976)
[»] chr5 (10 HSPs)
chr5 (64-194)||(9725723-9725856)
chr5 (67-194)||(4872896-4873025)
chr5 (64-217)||(35678848-35679007)
chr5 (161-194)||(6154481-6154514)
chr5 (161-194)||(7452769-7452802)
chr5 (62-118)||(22832454-22832511)
chr5 (161-194)||(26668292-26668325)
chr5 (161-194)||(26939889-26939922)
chr5 (161-194)||(36430532-36430565)
chr5 (161-194)||(37646104-37646137)
[»] chr2 (9 HSPs)
chr2 (64-212)||(42925626-42925778)
chr2 (62-192)||(31329078-31329210)
chr2 (62-192)||(31335799-31335931)
chr2 (64-153)||(28604139-28604231)
chr2 (161-217)||(19896937-19896995)
chr2 (161-194)||(9179777-9179810)
chr2 (161-194)||(9184468-9184501)
chr2 (161-194)||(18345430-18345463)
chr2 (64-105)||(25637721-25637762)
[»] chr6 (5 HSPs)
chr6 (64-217)||(12689956-12690114)
chr6 (64-190)||(12797732-12797860)
chr6 (161-217)||(2699164-2699224)
chr6 (161-194)||(16835211-16835244)
chr6 (161-194)||(17963607-17963640)
[»] chr1 (6 HSPs)
chr1 (64-217)||(16036593-16036752)
chr1 (64-153)||(23191789-23191881)
chr1 (64-136)||(39586032-39586106)
chr1 (66-118)||(16038864-16038917)
chr1 (78-136)||(40167012-40167072)
chr1 (161-194)||(10136339-10136372)
[»] chr7 (5 HSPs)
chr7 (64-217)||(26286106-26286267)
chr7 (64-195)||(30259275-30259408)
chr7 (161-217)||(12181801-12181861)
chr7 (66-217)||(13313266-13313423)
chr7 (161-216)||(42625627-42625686)
[»] chr4 (10 HSPs)
chr4 (64-194)||(8029285-8029417)
chr4 (64-194)||(19102980-19103112)
chr4 (62-136)||(47245200-47245276)
chr4 (66-136)||(48275791-48275863)
chr4 (69-217)||(19107565-19107720)
chr4 (161-217)||(2820779-2820839)
chr4 (161-217)||(13064859-13064919)
chr4 (161-217)||(16422033-16422093)
chr4 (161-217)||(51698916-51698976)
chr4 (161-194)||(8694727-8694760)
[»] scaffold0054 (1 HSPs)
scaffold0054 (64-217)||(26428-26587)
[»] chr8 (1 HSPs)
chr8 (63-110)||(4097310-4097357)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 2206748 - 2206932
Alignment:
Q  30 aatatcacagacaaagattgatgtcattgatgtgtgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaagttaaaca-caagttattaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  2206748 aatatcacagacaaagattgatgtcattgatgtgtgttggaacattggtgtgaaaatggaaagaaattggaaggttggaagttaaacaccaagttattaa 2206847  T
Q  129 actttgattagtgttatctgaattgnnnnnnntagagtgtgggggacccacataaaatagaacacatcagtagtgtttaaatagc 213  Q
    | ||||||||||||| | | |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2206848 attttgattagtgttgtgtaaattgaaaaaaatagagtgtgggggacccacataaaatagaacacatcagtagtgtttaaatagc 2206932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 3656207 - 3656366
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttga-ttagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||| ||||||| ||||| |||||||||||| |||||||| | |||||||           
T  3656207 tgttggaacattggtgtgaagatggaaagaaaatggaaggttggaagattaaacaccaagtaattaaactttgatttagtgttgtgtgaattg-aaaaaa 3656305  T
Q  161 tagagtgtgggggacccacataaaatagaac----acatcagtagtgtttaaatagcggta 217  Q
    |||| ||| |||| |||||||||||||||||    |||| |||||||||||||||| ||||    
T  3656306 tagaatgtaggggtcccacataaaatagaacacggacattagtagtgtttaaatagtggta 3656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 29351374 - 29351300
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat 136  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||    
T  29351374 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaatttattaaactttgat 29351300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 38891262 - 38891188
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat 136  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||| | ||| |||||||||||||    
T  38891262 tgttggaacattggtgtgaaggtggaaagaaattggaaggttggaagattaaacaccgagtaattaaactttgat 38891188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 20521008 - 20520948
Alignment:
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| |||||||||||||||    |||||| |||||||||||||| ||||||    
T  20521008 tagagtgtgggggtcccacataaaatagaatacacacattagtagtgtttaaattgcggta 20520948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 18473053 - 18473020
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  18473053 tagagtgtgggggtcccacataaaatagaacaca 18473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 64845 - 64976
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaacacaagttattaaactttgat-tagtgttatctgaattgnnnnnnnt 161  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||| | ||||||        |    
T  64845 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacacaagtaattaaactttgatctagtgttgtgtgaatt-aaaaaaat 64943  T
Q  162 agagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||| |||| ||||||||||||||||||||    
T  64944 agagtgtaggggtcccacataaaatagaacaca 64976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 9725723 - 9725856
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||| | |||||||           
T  9725723 tgttggaacattggtgtcaagatggaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatatagtgttgtgtgaattgaaaaaaa 9725822  T
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||  | ||||||||||||||||||||    
T  9725823 tagagtgtggatgtcccacataaaatagaacaca 9725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 4873025 - 4872896
Alignment:
Q  67 tggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttga-ttagtgttatctgaattgnnnnnnntag 163  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||| | |||||||       |||    
T  4873025 tggaactttggtgtgaagatggaaagaaattgaaaggttggaagattaaacaccaaattattaaactttgatttagtgttgtgtgaattg-aaaaaatag 4872927  T
Q  164 agtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||  ||| |||||||||||||||    
T  4872926 agtgtgggggttccatataaaatagaacaca 4872896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 35678848 - 35679007
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||||||| | |||||||           
T  35678848 tgttggaacattggtgtgcagatggaaagaaattggaaggttggaagattaaacatcaagtaattaaactttgatctagtgttgtgtgaattg-aaaaaa 35678946  T
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||||  | | |||||||||||||||    |||||| |||||||||||||||| ||||    
T  35678947 tagagtgtaagagtcccacataaaatagaacacacacattagtagtgtttaaatagtggta 35679007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 6154481 - 6154514
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  6154481 tagagtgtgggggtcccacataaaatagaacaca 6154514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 7452802 - 7452769
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  7452802 tagagtgtgggggtcccacataaaatagaacaca 7452769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 22832454 - 22832511
Alignment:
Q  62 tgtgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaacac 118  Q
    ||||||||||||||||||||||  || || ||||||| ||||||||||| ||||||||    
T  22832454 tgtgttggaacattggtgtgaagttgaaaggaaattgtaaggttggaagattaaacac 22832511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 26668325 - 26668292
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  26668325 tagagtgtgggggtcccacataaaatagaacaca 26668292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 26939922 - 26939889
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  26939922 tagagtgtgggggtcccacataaaatagaacaca 26939889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 36430565 - 36430532
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  36430565 tagagtgtgggggtcccacataaaatagaacaca 36430532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 37646104 - 37646137
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  37646104 tagagtgtgggggtcccacataaaatagaacaca 37646137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 42925626 - 42925778
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||||||| | |||||||           
T  42925626 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagtaattaaactttgatctagtgttgtgtgaattg-aaaaaa 42925724  T
Q  161 tagagtgtgggggacccacataaaataga--acacatcagtagtgtttaaatag 212  Q
    |||||||||| || ||||| |||||||||  |||||| ||||||||||||||||    
T  42925725 tagagtgtggaggtcccacgtaaaatagaacacacattagtagtgtttaaatag 42925778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 31329210 - 31329078
Alignment:
Q  62 tgtgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnn 158  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||| | |||||||         
T  31329210 tgtgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattg-aaaa 31329112  T
Q  159 nntagagtgtgggggacccacataaaatagaaca 192  Q
      |||||||||| || ||||| ||||||||||||    
T  31329111 aatagagtgtggaggtcccacgtaaaatagaaca 31329078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 31335931 - 31335799
Alignment:
Q  62 tgtgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnn 158  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||||| | |||||||         
T  31335931 tgtgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattg-aaaa 31335833  T
Q  159 nntagagtgtgggggacccacataaaatagaaca 192  Q
      |||||||||| || ||||| ||||||||||||    
T  31335832 aatagagtgtggaggtcccacgtaaaatagaaca 31335799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 28604231 - 28604139
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattg 153  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||| ||||| |||||| |||||| ||||||| | |||||||    
T  28604231 tgttggaacattggtgtgaagatgaaaagaaattggaaggttggaagattaaacaccaagtaattaaattttgatctagtgttgtgtgaattg 28604139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 19896995 - 19896937
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaa--cacatcagtagtgtttaaatagcggta 217  Q
    ||||| ||||||| ||||||||||||||||  ||||| |||||||||||||| ||||||    
T  19896995 tagagcgtgggggtcccacataaaatagaacacacattagtagtgtttaaattgcggta 19896937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 9179777 - 9179810
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  9179777 tagagtgtgggggtcccacataaaatagaacaca 9179810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 9184468 - 9184501
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  9184468 tagagtgtgggggtcccacataaaatagaacaca 9184501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 18345463 - 18345430
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  18345463 tagagtgtgggggtcccacataaaatagaacaca 18345430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 25637721 - 25637762
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggtt 105  Q
    ||||||||||||||||||||  ||||| ||||||||||||||    
T  25637721 tgttggaacattggtgtgaagttggaaggaaattgaaaggtt 25637762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 12690114 - 12689956
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttgg-aagttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||||| |||||||||||||| |||||||| || ||||||| ||| ||||||||||||||| ||||||| | |||||||           
T  12690114 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaaaattaaacaccaaattattaaactttgatctagtgttgtgtgaattg-aaaaaa 12690016  T
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    |||||||| || | |||||||||||||||    |||||| |||||||||||||||||||||    
T  12690015 tagagtgt-ggagtcccacataaaatagaacacacacattagtagtgtttaaatagcggta 12689956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 12797732 - 12797860
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||| |||||||||||  ||||| ||||||||||||||||||| ||||||| ||||| |||| |||||||| ||||||| | |||||||           
T  12797732 tgttggaatattggtgtgaagttggaaggaaattgaaaggttggaagattaaacaccaagtaattagactttgatctagtgttgtgtgaattg-aaaaaa 12797830  T
Q  161 tagagtgtgggggacccacataaaatagaa 190  Q
    ||||||||| ||| ||||||||||||||||    
T  12797831 tagagtgtgtgggtcccacataaaatagaa 12797860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 2699164 - 2699224
Alignment:
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| |||||||||||||||    |||||| |||||||||||||| ||||||    
T  2699164 tagagtgtgggggtcccacataaaatagaattcacacattagtagtgtttaaattgcggta 2699224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 16835211 - 16835244
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  16835211 tagagtgtgggggtcccacataaaatagaacaca 16835244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 17963607 - 17963640
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  17963607 tagagtgtgggggtcccacataaaatagaacaca 17963640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 16036752 - 16036593
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||| ||||||| ||||| | ||||||||||| ||||||| | |||||||           
T  16036752 tgttggaacattggtgtgaagatggaaagaaattacaaggttggaagattaaacaccaagtaactaaactttgatctagtgttgtgtgaattg-aaaaaa 16036654  T
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    |||||||||| || |||||||||||||||    |||||| |||||||||||||||| ||||    
T  16036653 tagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggta 16036593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 23191789 - 23191881
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattg 153  Q
    |||||||||||||||||||| |||||||||||||| || |||||||| ||||||| ||||||||||||||||||| ||||||| | |||||||    
T  23191789 tgttggaacattggtgtgaagatggaaagaaattggaacgttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattg 23191881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 39586032 - 39586106
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat 136  Q
    |||||||||||||||||||| |||||| |||||||||| |||| ||| ||||| | |||||||||||||||||||    
T  39586032 tgttggaacattggtgtgaagatggaaggaaattgaaatgttgaaagattaaagatcaagttattaaactttgat 39586106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 16038917 - 16038864
Alignment:
Q  66 ttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaacac 118  Q
    |||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||    
T  16038917 ttggaacattggcgtgaagatggaaagaaattgaaaggtttgaagattaaacac 16038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 40167072 - 40167012
Alignment:
Q  78 tgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat 136  Q
    |||||| ||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  40167072 tgtgaagatgaaaagaaattggaaggttggaagattaaacaccaagttattaaactttgat 40167012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 10136372 - 10136339
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  10136372 tagagtgtgggggtcccacataaaatagaacaca 10136339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 26286106 - 26286267
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattg-nnnnnn 159  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||||||| | | |||||           
T  26286106 tgttggaacattggtgtgaagatggaaagaaattggaaggttggaagattaaacaccaagtaattaaactttgatctagtgttgtataaattgaaaaaaa 26286205  T
Q  160 ntagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
      | |||||||||| |||||||||||||||    |||||| |||||||||||||||| ||||    
T  26286206 aaatagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaatagtggta 26286267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 30259408 - 30259275
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||| ||||| | ||||| ||||||||||||| ||||||| | | |||||           
T  30259408 tgttggaacattggtgtggagatggaaataaattgaaaggttggaagattaaataccaagtaattaaactttgatctagtgttttgtaaattg-aaaaaa 30259310  T
Q  161 tagagtgtgggggacccacataaaatagaacacat 195  Q
    ||||||||||| || |||||||||||||| |||||    
T  30259309 tagagtgtgggagatccacataaaatagatcacat 30259275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 12181801 - 12181861
Alignment:
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| |||||||||||||||    |||||| |||||||||||||| ||||||    
T  12181801 tagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggta 12181861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 13313266 - 13313423
Alignment:
Q  66 ttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttga-ttagtgttatctgaattgnnnnnnnta 162  Q
    ||||||||||| |||||| ||||||||||| || |||||| |||| |||||||  |||||| |||||||||| ||||| || | |||||||       ||    
T  13313266 ttggaacattgatgtgaagatggaaagaaactggaaggtttgaagattaaacattaagttactaaactttgatttagtattgtgtgaattg-aaaaaata 13313364  T
Q  163 gagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||||  | |||||||||||||||    |||||| |||||||||||||||| ||||    
T  13313365 gagtgtggatgtcccacataaaatagaacacacacattagtagtgtttaaatagtggta 13313423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 42625627 - 42625686
Alignment:
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggt 216  Q
    ||||||||||||| |||||||||||||||    |||||| |||||||||||||| |||||    
T  42625627 tagagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaattgcggt 42625686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 8029285 - 8029417
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||| ||||||| ||||| ||||||||||||| |||| || | |||||||           
T  8029285 tgttggaacattggtgtgaagatggaaagaaattagaaggttagaagattaaacaccaagtaattaaactttgatctagtattgtgtgaattg-aaaaaa 8029383  T
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  8029384 tagagtgtgggggtcccacataaaatagaacaca 8029417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 19103112 - 19102980
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaac-acaagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||| ||||||  ||||||||||||||||||| ||||||| | |||||||           
T  19103112 tgttgaaacattggtgtgaagatggaaagaaattggacggttggaagattaaactccaagttattaaactttgatctagtgttgtgtgaattg-aaaaaa 19103014  T
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    |||||||||| || ||||||||||||||||||||    
T  19103013 tagagtgtggaggtcccacataaaatagaacaca 19102980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 47245276 - 47245200
Alignment:
Q  62 tgtgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaacac-aagttattaaactttgat 136  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||| ||||||||||| ||||||    
T  47245276 tgtgttggaacattggtgtgaagatggaaagaaattggaaggttgaaagattaaacactaagttattaaagtttgat 47245200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 48275791 - 48275863
Alignment:
Q  66 ttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat 136  Q
    |||||||||||||||||| | |||||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  48275791 ttggaacattggtgtgaagacggaaagaaattggaaggttggaagattaaacatcaagttattaaactttgat 48275863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 19107720 - 19107565
Alignment:
Q  69 gaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttga--ttagtgttatctgaattgnnnnnnntaga 164  Q
    ||||||||||||||   |||||| |||||| ||||||||||| ||||||| ||||||||||||||||||  | ||| || | |||||||       ||||    
T  19107720 gaacattggtgtgatgctggaaataaattggaaggttggaagattaaacaccaagttattaaactttgatctaagtattgtgtgaattg-aaaatataga 19107622  T
Q  165 gtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    |||||| || |||||||||||||||    |||||| |||||||||||||||| ||||    
T  19107621 gtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggta 19107565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 2820839 - 2820779
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaa----cacatcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| ||||||||||||||||    ||||| |||||||||||||| ||||||    
T  2820839 tagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggta 2820779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 13064859 - 13064919
Alignment:
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| |||||||||||||||    |||||||| |||||||||||| ||||||    
T  13064859 tagagtgtgggggtcccacataaaatagaacacacacatcaatagtgtttaaattgcggta 13064919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 16422093 - 16422033
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaaca----catcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| ||||||||||||||||||    ||| |||||||||||||| ||||||    
T  16422093 tagagtgtgggggtcccacataaaatagaacacacgcattagtagtgtttaaattgcggta 16422033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 51698976 - 51698916
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaa----cacatcagtagtgtttaaatagcggta 217  Q
    ||||||||||||| ||||||||||||||||    ||||| |||||||||||||| ||||||    
T  51698976 tagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggta 51698916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 8694760 - 8694727
Alignment:
Q  161 tagagtgtgggggacccacataaaatagaacaca 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  8694760 tagagtgtgggggtcccacataaaatagaacaca 8694727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 26587 - 26428
Alignment:
Q  64 tgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag-ttaaaca-caagttattaaactttgat-tagtgttatctgaattgnnnnnnn 160  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| | |||||||||| || ||| ||| | |||||||           
T  26587 tgttggaacattggtgtgaaaattgaaagaaattggaaggttggaagattaaacaccaaataattaaactttcatctagagttgtgtgaattg-aaaaaa 26489  T
Q  161 tagagtgtgggggacccacataaaataga----acacatcagtagtgtttaaatagcggta 217  Q
    ||||||| || || |||||||||||||||    |||||| |||||||||||||||| ||||    
T  26488 tagagtgcggaggtcccacataaaatagaacacacacattagtagtgtttaaatagaggta 26428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 4097357 - 4097310
Alignment:
Q  63 gtgttggaacattggtgtgaaaatggaaagaaattgaaaggttggaag 110  Q
    |||||||||||||| |||||| || ||||||||||| |||||||||||    
T  4097357 gtgttggaacattgatgtgaagatagaaagaaattggaaggttggaag 4097310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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