View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0554_low_12 (Length: 238)

Name: NF0554_low_12
Description: NF0554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0554_low_12
NF0554_low_12
[»] chr3 (2 HSPs)
chr3 (11-96)||(26782027-26782112)
chr3 (1-37)||(47410518-47410554)
[»] chr4 (2 HSPs)
chr4 (10-93)||(47683475-47683555)
chr4 (1-59)||(48458454-48458509)
[»] chr1 (2 HSPs)
chr1 (13-92)||(35112423-35112499)
chr1 (1-37)||(33218417-33218453)
[»] chr8 (1 HSPs)
chr8 (16-48)||(11903288-11903320)
[»] chr5 (1 HSPs)
chr5 (3-53)||(29686224-29686271)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 26782112 - 26782027
Alignment:
Q  11 tgtcgttcaaaaagataagaatttatagtattatatttgttattttattagtgtctatggaaaatacaagtatagtttgttatgta 96  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  26782112 tgtcgtttaaaaagataagaatttatagtattatatctgttattttgttagtgtcaatggaaaatacaagtatagtttgttatgta 26782027  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47410554 - 47410518
Alignment:
Q  1 attttatttgtgtcgttcaaaaagataagaatttata 37  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  47410554 attttattggtgtcattcaaaaagataagaatttata 47410518  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 47683475 - 47683555
Alignment:
Q  10 gtgtcgttcaaaaagataagaatttatagtattatatttgttattttattagtgtctatggaaaatacaagtatagtttgttat 93  Q
    ||||| |||||||| |||||||||||||   ||||||||||||| |||||  ||||  || |||||| || |||||||||||||    
T  47683475 gtgtcattcaaaaatataagaatttata---ttatatttgttatattattgatgtcgttgaaaaatataaatatagtttgttat 47683555  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48458454 - 48458509
Alignment:
Q  1 attttatttgtgtcgttcaaaaagataagaatttatagtattatatttgttattttatt 59  Q
    ||||| || |||||||||||||| |||||||||||   ||||||||||||||| |||||    
T  48458454 attttgttggtgtcgttcaaaaaaataagaattta---tattatatttgttatattatt 48458509  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 35112423 - 35112499
Alignment:
Q  13 tcgttcaaaaagataagaatttatagtattatatttgttattttattagtgtctatggaaaatacaagtatagtttgtta 92  Q
    ||||| |||||||||||||||||||   ||||||||| ||| ||||||||||   || |||| | |||||||||||||||    
T  35112423 tcgttaaaaaagataagaatttata---ttatatttgctatattattagtgttattgaaaaagataagtatagtttgtta 35112499  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33218417 - 33218453
Alignment:
Q  1 attttatttgtgtcgttcaaaaagataagaatttata 37  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  33218417 attttattggtgtcattcaaaaagataagaatttata 33218453  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 11903288 - 11903320
Alignment:
Q  16 ttcaaaaagataagaatttatagtattatattt 48  Q
    |||||||||||||||||||||| ||||||||||    
T  11903288 ttcaaaaagataagaatttataatattatattt 11903320  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 29686271 - 29686224
Alignment:
Q  3 tttatttgtgtcgttcaaaaagataagaatttatagtattatatttgttat 53  Q
    |||||| ||||| ||||||||||||||||||||   |||||||||||||||    
T  29686271 tttattggtgtcattcaaaaagataagaattta---tattatatttgttat 29686224  T

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