View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0554_low_4 (Length: 358)
Name: NF0554_low_4
Description: NF0554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0554_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 20596302 - 20595961
Alignment:
| Q |
1 |
ttcttcccacgataaattaccttcaccctccttttatcattcttaagaaactttaaattcctaccagaatgtacaacaaatgttcttacagcatcttgaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
20596302 |
ttcttcccacgacaaattaccttcaccctccttttatcattcttatcaaactttaaattcctgccagaatgtacagcaaatgttcttacagcatcttgaa |
20596203 |
T |
|
| Q |
101 |
attccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaatgtggcaaacttaagcttactcccaccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596202 |
attccttctttgacacaaaataagtccctacctcccactca--gtcacgcatgttttcaggtttcttaaatgtggcaaacttaagcttactcccaccatt |
20596105 |
T |
|
| Q |
201 |
ttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctgactatgctagattgaccaacagtttggttt |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20596104 |
ttcctcttcctcttcactttcaggtccactctctaacatatcactgttatactcctcttcctcaactctgactatgctagattgaccaatagtttggttt |
20596005 |
T |
|
| Q |
301 |
gtgttaatttgctcatccactacctcatcatcaaacacaggttc |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596004 |
gtgttaatttgctcatccactacctcatcatcaaacacaggttc |
20595961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 8697303 - 8696960
Alignment:
| Q |
1 |
ttcttcccacgataaattaccttcaccctccttttatcattcttaagaaactttaaattcctaccagaatgtacaacaaatgttcttacagcatcttgaa |
100 |
Q |
| |
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|||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |
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| T |
8697303 |
ttcttcccacgacatattaccttcaccctccttttatcattcttaacaaactttaaattcctgccagaatgtacagcaaatgttctaacagcatcttgaa |
8697204 |
T |
|
| Q |
101 |
attccttctttgacacaaaataagtccctacctcccactcatagtcacgcttgttttcaggtttcttaaatgtggcaaacttaagcttactcccaccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8697203 |
attccttctttgacacaaaataagtccctacctcccactcatagtcacgcatattttcaggtttcttaaatgtggcaaacttaagcttattcccaccatt |
8697104 |
T |
|
| Q |
201 |
ttcctcttcctcttcactttcaggttcactctctaacacatcattgttatactcctcttcctcaactctgactatgctagattgaccaacagtttggttt |
300 |
Q |
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|
||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8697103 |
ttcctcttcatcttcactttcagctccactctctaacacatcactgttatactcctcttcctcaactctgactatgctagattgaccaacattttggttt |
8697004 |
T |
|
| Q |
301 |
gtgttaatttgctcatccactacctcatcatcaaacacaggttc |
344 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
8697003 |
gtgttagtttgctcacccactacctcatcatcaaacacaggttc |
8696960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 37104373 - 37104437
Alignment:
| Q |
82 |
gttcttacagcatcttgaaattccttctttgacacaaaataagtccctacctcccactcatagtc |
146 |
Q |
| |
|
||||| || ||||||||||| | |||||| |||||||||| |||||| ||||||| |||||||| |
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| T |
37104373 |
gttctcaccgcatcttgaaactgcttcttaaacacaaaatatgtccctgcctcccattcatagtc |
37104437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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