View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0554_low_7 (Length: 306)
Name: NF0554_low_7
Description: NF0554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0554_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 23225436 - 23225173
Alignment:
| Q |
30 |
aatcattgtcctggtgttaaatttagatagcgaactttgtctttaattatctctcaattgtatctgctttgctgaattaattcatttgcttaatttaatt |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23225436 |
aatcattgtcctggtgttaattttagatagcgaactttgtctttaattatctctcaattgtatctgctttgctgaattaattcatttgcttaatttaatt |
23225337 |
T |
|
| Q |
130 |
tgtcgattttatttgcttgtgttttacttctaagaatatgatgtactgctgtttgaattgtttaatttgcttcttactaagcaaggaacggggaattgac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23225336 |
tgtcgattttatttgcttgtgttttacttctaagaatatgatgtactgctgtttgaattgtttaatttgcttcttactaagcaaggaacggggaattgac |
23225237 |
T |
|
| Q |
230 |
ttgacttgcataaaaaatcaatcctataaagtattgatagaagcttgagtataatggggtgcct |
293 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23225236 |
ttgacttgcataaaaattcaatcctataaagtattgataggagcttgagtataatggggtgcct |
23225173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 49855121 - 49855064
Alignment:
| Q |
92 |
tctgctttgctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgtttt |
154 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
49855121 |
tctgctttactgaattaattcatttgcttacttt-----gtcgattttatttgcttgtgtttt |
49855064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 82
Target Start/End: Complemental strand, 23217706 - 23217675
Alignment:
| Q |
51 |
tttagatagcgaactttgtctttaattatctc |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23217706 |
tttagatagcgaactttgtctttaattatctc |
23217675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 19369358 - 19369301
Alignment:
| Q |
101 |
ctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgttttactt |
158 |
Q |
| |
|
||||||||||||||| |||||||||||| || | ||||||| || ||||||||||||| |
|
|
| T |
19369358 |
ctgaattaattcattcgcttaatttaatatggcaattttatatgtttgtgttttactt |
19369301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 835 times since January 2019
Visitors: 3657