View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0554_low_8 (Length: 280)
Name: NF0554_low_8
Description: NF0554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0554_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 37931647 - 37931430
Alignment:
| Q |
18 |
agatagtgtgcgaaaaatgggtcctcaatcaaccataaacattagaggaatttagtgtctatagtttgatgatcatgcacaccagaacaagtcaaataaa |
117 |
Q |
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| T |
37931647 |
agatagtgtgcgaaaaatgggtcctcaatcaaccataaacattagaggaatttagtgtctatagtttgatgatcatgcacaccagaacaagtcaaataaa |
37931548 |
T |
|
| Q |
118 |
ttgggcaaaaaattaatattatttaactaagaaaatataatggaatttgttaaagcataaaattatatgcacaaagaaaagataaggttgaaaagtacat |
217 |
Q |
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| T |
37931547 |
ttgggcaaaaaattaatataattcaactaagaaaatataatggaatttgttaaagcataaaattatatgcacaaagaaaagataaggttgaaaagtacat |
37931448 |
T |
|
| Q |
218 |
ggcaattcatggaaattg |
235 |
Q |
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| T |
37931447 |
ggtaattcatggaaattg |
37931430 |
T |
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