View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_high_2 (Length: 616)
Name: NF0555_high_2
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Original strand, 47624912 - 47625488
Alignment:
| Q |
11 |
cagagagcacatgtataaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaatacc |
110 |
Q |
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| T |
47624912 |
cagagagcacatgtataaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaatacc |
47625011 |
T |
|
| Q |
111 |
ccaaaaaacgatatttagatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaa |
210 |
Q |
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| T |
47625012 |
ccaaaaaacgatatttagatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaa |
47625111 |
T |
|
| Q |
211 |
taatctagcagcttaaacagctatagtaaaatcatgtcatgccactgagagtacagagtcatctcttaatattgaaggtaattggtaccttggagagctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47625112 |
taatctagcagcttaaacagctatagtaaaatcatgtcatgccactgacagtacagagtcatctcttaatattgaaggtaattgttaccttggagagctc |
47625211 |
T |
|
| Q |
311 |
cagtgaaggaggaataactatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctgagaattctcctgtatattgga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625212 |
cagtgaaggaggaataactatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctgagaattctcctgtatattgga |
47625311 |
T |
|
| Q |
411 |
ggagcccatatatgtgatgagtctctcatttgctcacttaattgaccagatagcttcattatagcctgccgacgaaaggttgaaattggttatcaaaaga |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625312 |
ggagcccatatatgtgatgagtctctcatttgctcacttaattgaccagatagcttcattatagcctgccgacgaaaggttgaaattggttatcaaaaga |
47625411 |
T |
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| Q |
511 |
aatttctacactttaatatgaattcaaataataaacacaaaggagatccagagcaacatagccaggcatgcataaaa |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625412 |
aatttctacactttaatatgaattcaaataataaacacaaaggagatccagagcaacatagccaggcatgcataaaa |
47625488 |
T |
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