View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_high_3 (Length: 594)
Name: NF0555_high_3
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 29 - 586
Target Start/End: Original strand, 34022815 - 34023373
Alignment:
| Q |
29 |
agattcatttcaatctggtataattttcttgcaaaccaactcattctccgataaccatatgtcctagctcaatcaaatatatccttttatttgtttgnnn |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34022815 |
agattcatttcaatctggtataattttcttgcaaaccaactcattctccgataaccatatgtcctagctcaatcaaatatattcttttatttgtttgttt |
34022914 |
T |
|
| Q |
129 |
nnnnnattgatgtattgtttacttatagggatatggtctgactgaaagtggaggagcggtagcaagaatgataggttatgatgaagctaagcgccacggt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34022915 |
tttt-attgatgtattgtttacttatagggatatggtctgactgaaagtggaggagcggtagcaagaatgataggttatgatgaagctaagcgccacggt |
34023013 |
T |
|
| Q |
229 |
tctgtgggtcgactagcagaaaatatggaagccaagatagttgaccctgttactgttgaggcattatctcctggccataaaggggagctttggttgcgcg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
34023014 |
tctgtgggtcgactagcagaaaatatggaagccaagatagttgaccctgttactgttgaggcattatctcctggttataaaggggagctttggttgcgag |
34023113 |
T |
|
| Q |
329 |
gaccaacaatcatgaaaggtgactaataaacttctcc--atttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcactaaaaccaaa |
426 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
34023114 |
gaccaacaatcatgaaaggtgattaataaacttctccatatttatgggaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaccaaa |
34023213 |
T |
|
| Q |
427 |
gatttgctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtgga |
526 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023214 |
gatttgctatgttcatgaagttgtaaaatggaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtgga |
34023313 |
T |
|
| Q |
527 |
cagattcatgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
586 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
34023314 |
cagattcatgtattcaatgaataagtctatcactttagttcattaattagagttcatctc |
34023373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 134 - 586
Target Start/End: Original strand, 34030173 - 34030625
Alignment:
| Q |
134 |
attgatgtattgtttacttatagggatatggtctgactgaaagtggaggagcggtagcaagaatgataggttatgatgaagctaagcgccacggttctgt |
233 |
Q |
| |
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||||||||| |||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
34030173 |
attgatgtactgtt-acttttagggatatggtctgactgaaagtggaggaggggcagcaagaatgataggttttgatgaagctaagcgccacggttctgt |
34030271 |
T |
|
| Q |
234 |
gggtcgactagcagaaaatatggaagccaagatagttgaccctgttactgttgaggcattatctcctggccataaaggggagctttggttgcgcggacca |
333 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
34030272 |
gggtcgactagcagaaaatatggaagctaagatagttgaccctgttactggagaggcattatctcctggccagaaaggggagctttggttgcgaggacca |
34030371 |
T |
|
| Q |
334 |
acaatcatgaaaggtgactaataaacttctccatttatgggaaccattgcatttgcataatgttgggcagcgaaaatgtgcact-aaaaccaaagatttg |
432 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||| |
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| T |
34030372 |
acaatcatgaaaggtgattaataaacctctccatttatgcgaaccattgcatttgcataatgttaggcagtgaaaatgtgcactaaaaactaaagatttg |
34030471 |
T |
|
| Q |
433 |
ctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaagtaagctgacaacgagttaaataatgataatattagtggacagatt |
532 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||||||| |
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| T |
34030472 |
ctatgttcatgaagttgtaaaatgcaattatagatagagttgtgaaagttgcaaataggctgacaatgagttaagtaaagataatattagtggacagatt |
34030571 |
T |
|
| Q |
533 |
catgtattcaatgaataactctatcactttagttcattgattagagttcatctc |
586 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |
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|
| T |
34030572 |
catgtattcaatgaatatgtctctcactttagttcattgattggagttcatctc |
34030625 |
T |
|
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