View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_high_9 (Length: 355)
Name: NF0555_high_9
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 10693452 - 10693222
Alignment:
| Q |
49 |
gaatgttacgtgtattataaatagtggaattaccaaaggtatctagttattgaaaaatagcatatttcgattgatttattgaagaatagttattgacata |
148 |
Q |
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| T |
10693452 |
gaatgttatgtatattataaataatggaattaccaaaggtatctagttattgaaaaatagcatatttcgattgatttattgaagaatagttattgacata |
10693353 |
T |
|
| Q |
149 |
agtaattattgaattgtttgaaagagcatatgaaaacaacttatgatatgtttgtaacttattttcaggtaatctctatagggtaacttatgaaaacaat |
248 |
Q |
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| T |
10693352 |
agtaattattgaattgtttgaaagagcatatgaaaacaacttatgatatgtttgtaacttattttcaggtaatctctatagggtaacttatgaaaacaat |
10693253 |
T |
|
| Q |
249 |
ttatagtttatagtttgtatgcaaacatttt |
279 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10693252 |
ttatagtttatagtttgtatgcaaacatttt |
10693222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 10693191 - 10693150
Alignment:
| Q |
304 |
gtaatagaaatagtttatacaagaaaatgatacgtacctatg |
345 |
Q |
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| T |
10693191 |
gtaatagaaatagtttatacaagaaaatgatacgtacctatg |
10693150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 24281148 - 24281112
Alignment:
| Q |
161 |
attgtttgaaagagcatatgaaaacaacttatgatat |
197 |
Q |
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| T |
24281148 |
attgtttgagagagcttatgaaaacaacttatgatat |
24281112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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