View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0555_low_1 (Length: 731)

Name: NF0555_low_1
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0555_low_1
NF0555_low_1
[»] chr7 (8 HSPs)
chr7 (29-104)||(35428002-35428078)
chr7 (514-593)||(37162797-37162876)
chr7 (518-592)||(12633031-12633105)
chr7 (528-592)||(12632493-12632557)
chr7 (658-702)||(12632924-12632968)
chr7 (155-194)||(16701018-16701057)
chr7 (155-194)||(17675254-17675293)
chr7 (408-439)||(35427028-35427059)
[»] chr5 (6 HSPs)
chr5 (518-593)||(17511924-17511999)
chr5 (528-592)||(17515547-17515611)
chr5 (658-725)||(17512062-17512129)
chr5 (528-582)||(21044619-21044673)
chr5 (528-593)||(21045082-21045147)
chr5 (528-590)||(8705764-8705826)
[»] chr2 (2 HSPs)
chr2 (518-593)||(8151560-8151631)
chr2 (658-724)||(8151698-8151764)
[»] chr6 (3 HSPs)
chr6 (528-593)||(12142954-12143019)
chr6 (528-593)||(12142109-12142174)
chr6 (539-582)||(12143531-12143574)
[»] scaffold0133 (1 HSPs)
scaffold0133 (528-593)||(10034-10099)
[»] chr8 (2 HSPs)
chr8 (322-371)||(3047871-3047922)
chr8 (284-338)||(32304941-32304995)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 35428078 - 35428002
Alignment:
Q  29 atttaggcgatcatagtctagttagtgatttgggaggaaaatgagtgtgct-gtgctaggtgtgtgttctgtttttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35428078 atttaggcgatcatagtctagttagtgatttgggaggaaaatgagtgtgctagtgctaggtgtgtgttctgtttttg 35428002  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 514 - 593
Target Start/End: Original strand, 37162797 - 37162876
Alignment:
Q  514 ggactgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  37162797 ggactgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccatgtattgcttcttttt 37162876  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 518 - 592
Target Start/End: Complemental strand, 12633105 - 12633031
Alignment:
Q  518 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 592  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12633105 tgcacttacgtaacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacatgttgcttctttt 12633031  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 528 - 592
Target Start/End: Original strand, 12632493 - 12632557
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 592  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12632493 taacattgtggcgggctatgtcacatgacatagcaaataaaattgtgccacgtgttgcttctttt 12632557  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 702
Target Start/End: Complemental strand, 12632968 - 12632924
Alignment:
Q  658 cttcttctccttcaaaacgtgttatgctttccctcacttctccct 702  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||    
T  12632968 cttcttctccttcaaaacgcgttctgcgttccctcacttctccct 12632924  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 16701018 - 16701057
Alignment:
Q  155 aatattgtacggtttcttgtgagcatcttgcaattgaatc 194  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  16701018 aatattttacggtttcttgtgagcatcttgcatttgaatc 16701057  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 17675254 - 17675293
Alignment:
Q  155 aatattgtacggtttcttgtgagcatcttgcaattgaatc 194  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  17675254 aatattttacggtttcttgtgagcatcttgcatttgaatc 17675293  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 439
Target Start/End: Complemental strand, 35427059 - 35427028
Alignment:
Q  408 ttgttgcattgtgacttttctattacttctag 439  Q
    ||||||||||||||||||||||||||||||||    
T  35427059 ttgttgcattgtgacttttctattacttctag 35427028  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 518 - 593
Target Start/End: Original strand, 17511924 - 17511999
Alignment:
Q  518 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  17511924 tgcacttacgtaacattgtggcgggctatgtcacatggcatagccagtaaaattgtgccacatgttgcttcttttt 17511999  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 528 - 592
Target Start/End: Complemental strand, 17515611 - 17515547
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 592  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17515611 taacattgtggcgggctatgtcacatgacatagcaagtaaaattgtgccacatgttgcttctttt 17515547  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 658 - 725
Target Start/End: Original strand, 17512062 - 17512129
Alignment:
Q  658 cttcttctccttcaaaacgtgttatgctttccctcacttctcccttgcttcacttctccctatgctac 725  Q
    |||||||||||| |||||| |||  || ||||||||||||||||||||||||||||||||| ||||||    
T  17512062 cttcttctcctttaaaacgcgttcggcgttccctcacttctcccttgcttcacttctccctgtgctac 17512129  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 528 - 582
Target Start/End: Original strand, 21044619 - 21044673
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 582  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  21044619 taacattgtggcgggctatgtcacatgacatagctagtaatattgcgccacgtgt 21044673  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 593
Target Start/End: Complemental strand, 21045147 - 21045082
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||| ||||  |||||||||    
T  21045147 taacattgtggcgggctatgtcacatgacatagccagtaacatttcgccatgtgtcacttcttttt 21045082  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 590
Target Start/End: Original strand, 8705764 - 8705826
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctt 590  Q
    |||||||  |||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||    
T  8705764 taacattccggcgggctatctcacatgacatagcgagtaatattgtaccacgtgttgcttctt 8705826  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 518 - 593
Target Start/End: Original strand, 8151560 - 8151631
Alignment:
Q  518 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    |||| |||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||||    
T  8151560 tgcacttacgtaacattgtggcgggctatgtcacatgacat----agtaagattgtgccacgtgttgcttcttttt 8151631  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 658 - 724
Target Start/End: Original strand, 8151698 - 8151764
Alignment:
Q  658 cttcttctccttcaaaacgtgttatgctttccctcacttctcccttgcttcacttctccctatgcta 724  Q
    ||||||||||||||||||| |||  || |||||||| |||||||||||||||||||||||| |||||    
T  8151698 cttcttctccttcaaaacgcgttcggcgttccctcatttctcccttgcttcacttctccctgtgcta 8151764  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 528 - 593
Target Start/End: Original strand, 12142954 - 12143019
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||||    
T  12142954 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacgtgtcacttcttttt 12143019  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 593
Target Start/End: Original strand, 12142109 - 12142174
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||| |||  |||||||||    
T  12142109 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacatgtcacttcttttt 12142174  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 539 - 582
Target Start/End: Complemental strand, 12143574 - 12143531
Alignment:
Q  539 cgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 582  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  12143574 cgggctatgtcacatgacatagccaataatattgtgccacgtgt 12143531  T

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Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 593
Target Start/End: Complemental strand, 10099 - 10034
Alignment:
Q  528 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 593  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||  ||| ||||  |||||||||    
T  10099 taacattgtggtgggctatgtcacatgacatagccagtaatattgcaccatgtgtcacttcttttt 10034  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 3047871 - 3047922
Alignment:
Q  322 tgtacaatatgatgtaa--gtttcagttttcattttgaaattgacagtgtaa 371  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||    
T  3047871 tgtacaatatgatgtaaaagtttcagttttcattttgaaattgacaatgtaa 3047922  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 32304941 - 32304995
Alignment:
Q  284 aaatttgcattccactaaaattagcattcggatatatttgtacaatatgatgtaa 338  Q
    |||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||    
T  32304941 aaatttgcatcccactaaaattaccatttggatatttttgtacattatgatgtaa 32304995  T

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