View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0555_low_10 (Length: 413)
Name: NF0555_low_10
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_10 |
 | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 384
Target Start/End: Original strand, 12406126 - 12406493
Alignment:
| Q |
13 |
aatatataagtgagatgacccatatagttaattaacactttaagattttgggtaaatatgtggtgttcaaactgacttgtgtaatagcccttagctcaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12406126 |
aatatataagtgagatgacccatatagttaa----cactttaagattttgggtaaatatgtggtgttcaaactgacttgtgtaatagcccttagctcaat |
12406221 |
T |
|
| Q |
113 |
gtgttgatccaccacagtgtagactcccttggaagtcccaacattgtcagaccctgacatgtgtcagacatgcctttaatatgaattgtcggtgttacat |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12406222 |
gtgttgatccaccacagtttagactcccctggaagtctcaacattgtcagaccctgacatgtgtcagacatgcctttaatatgaattgtcggtgttacat |
12406321 |
T |
|
| Q |
213 |
ttgattggtacctactattttgatatctaggtagtgtattatttgtttatattttctttgttgtttattatagatacaagtaaatcaatgtggatgaata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12406322 |
ttgattggtacctactattttgatatctaggtagtgtattatttgtttatattttctttgttgtttattatagatacaagtaaatcaatgtggatgaata |
12406421 |
T |
|
| Q |
313 |
taccaatgtccattcnnnnnnnnactggtctgaagattcttgtgaacaaagtggagtttcgttggaaggttc |
384 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12406422 |
taccaatgtccattcttttttttactggtctgaagattcttgtgaacaaagtggagtttcgctggaaggttc |
12406493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 1429 - 1458
Alignment:
| Q |
9 |
gaataatatataagtgagatgacccatata |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1429 |
gaataatatataagtgagatgacccatata |
1458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1388 times since January 2019
Visitors: 3669