View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0555_low_11 (Length: 408)

Name: NF0555_low_11
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0555_low_11
NF0555_low_11
[»] chr4 (3 HSPs)
chr4 (176-313)||(2464463-2464601)
chr4 (192-319)||(6736510-6736629)
chr4 (335-378)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (211-401)||(28173413-28173596)
chr2 (177-319)||(11951637-11951782)
chr2 (176-319)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (177-319)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (177-319)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (180-313)||(45227735-45227870)
chr3 (176-317)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (176-261)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (176-319)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 2464463 - 2464601
Alignment:
Q  176 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgt 274  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2464463 agcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgt 2464562  T
Q  275 tatgatcccattgaattcttgtgactcaccatttctttg 313  Q
     ||| ||||||||||||||||||||||||||||||||||    
T  2464563 catgctcccattgaattcttgtgactcaccatttctttg 2464601  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 6736629 - 6736510
Alignment:
Q  192 caaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgttatgatcccattgaat 290  Q
    |||||||||||| |||||||||||||||||||||| |||||||||         |||||   ||||||| || ||||||||||| ||| |||| ||||||    
T  6736629 caaaggatgaaacttttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtttgtcatgctcccgttgaat 6736539  T
Q  291 tcttgtgactcaccatttctttgatttca 319  Q
    ||||||||||||||||||||||| |||||    
T  6736538 tcttgtgactcaccatttctttggtttca 6736510  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 2464618 - 2464660
Alignment:
Q  335 attcacagtttgcaaaggattaaatctcttggagttttcttctt 378  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  2464618 attcacagtttgcaaaggatt-aatctcttggagttttcatctt 2464660  T

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Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 211 - 401
Target Start/End: Original strand, 28173413 - 28173596
Alignment:
Q  211 tttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgttatgatcccattgaattcttgtgactcaccatttc 309  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28173413 tttaaaaattgtttggataaagaccggtgaaaacttcacttgtccattatgtccactttgtttgttatgaccccattgaattcttgtgactcaccatttc 28173512  T
Q  310 tttgatttcannnnnnnnnnnnnagattcacagtttgcaaaggattaaatctcttggagttttcttcttgtctacgaaaaacacctatgcta 401  Q
    ||||||||||             ||| ||| ||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||    
T  28173513 tttgatttca-----ttttttttagagtcagagtttgcaaaggattaaatctcttggagtt---ttcttgtctaggaaaaacacctatgcta 28173596  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 11951637 - 11951782
Alignment:
Q  177 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccatt--atgtccactttgtttg 273  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |  || |||  ||||||||||||||||    
T  11951637 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatctattaaatgtccactttgtttg 11951736  T
Q  274 ttatgatcccattgaattcttgtgactcaccatttctttgatttca 319  Q
    | ||| |||||||||||| ||||||||||||||||||||| |||||    
T  11951737 tcatgctcccattgaattattgtgactcaccatttctttggtttca 11951782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 2743968 - 2744109
Alignment:
Q  176 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgt--ccattatgtccactttgttt 272  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||||      |||| || | |  ||||||| |  |||||||||    
T  2743968 agcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 2744062  T
Q  273 gttatgatcccattgaattcttgtgactcaccatttctttgatttca 319  Q
    || ||| |||||||||||||||||||||||||||||||||| |||||    
T  2744063 gtcatgctcccattgaattcttgtgactcaccatttctttggtttca 2744109  T

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Target: scaffold0312 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 18990 - 19133
Alignment:
Q  177 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgtt 275  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||   |||||||||||||||||||||||     
T  18990 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 19089  T
Q  276 atgatcccattgaattcttgtgactcaccatttctttgatttca 319  Q
    ||| || ||||||||| ||||||||||||||||||||| |||||    
T  19090 atgctctcattgaattattgtgactcaccatttctttggtttca 19133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 411580 - 411437
Alignment:
Q  177 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgtt 275  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||   |||||||||||||||||||||||     
T  411580 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 411481  T
Q  276 atgatcccattgaattcttgtgactcaccatttctttgatttca 319  Q
    ||| || ||||||||| ||||||||||||||||||||| |||||    
T  411480 atgctctcattgaattattgtgactcaccatttctttggtttca 411437  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 45227735 - 45227870
Alignment:
Q  180 tgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgt-ccactttgtttgttat 277  Q
    |||||||| || | |||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||   ||||||| | ||||||||||||| ||    
T  45227735 tgaatgagctttcgaaggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaattttcacttacccattattttccactttgtttgtcat 45227834  T
Q  278 gatcccattgaattcttgtgactcaccatttctttg 313  Q
    | ||||||||||||||||||||||||||||||||||    
T  45227835 gctcccattgaattcttgtgactcaccatttctttg 45227870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 29896808 - 29896665
Alignment:
Q  176 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaa---ttgtttggtaaagaccggtgaaaacttcactcgtccattatgtccactttgttt 272  Q
    |||||||||||| ||  |||||||||| |||||||||||||||   | ||| | ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  29896808 agcatgaatgagctttaaaaggatgaa-tttttagtttaaaaaaaatggttggataaagaccggtgaaaacatcactcatccattatgtccacttggttt 29896710  T
Q  273 gttatgatcccattgaattcttgtgactcaccatttctttgattt 317  Q
    || ||| ||||||||||||||||||| ||| ||||||||||||||    
T  29896709 gtcatgctcccattgaattcttgtgattcatcatttctttgattt 29896665  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 26300227 - 26300141
Alignment:
Q  176 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgt 261  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  26300227 agcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatgaccgatgaaaacttcactcatccattatgt 26300141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 29935083 - 29935224
Alignment:
Q  176 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgt--ccattatgtccactttgttt 272  Q
    |||||||||||| || |||| ||||||| |||||||||||||||||||||| |||||||||      |||| || | |  ||||||| |  |||||||||    
T  29935083 agcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 29935177  T
Q  273 gttatgatcccattgaattcttgtgactcaccatttctttgatttca 319  Q
    || ||| ||||||||||||||||||||| |||||||||||| |||||    
T  29935178 gtcatgctcccattgaattcttgtgacttaccatttctttggtttca 29935224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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