View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_low_16 (Length: 316)
Name: NF0555_low_16
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 1096172 - 1095875
Alignment:
| Q |
19 |
agatgaattccatgaagattaaaatgattcgatgtttcttctatccagttttgagtcgattcaaaactaactagaaactctctaacttgagtgaatccat |
118 |
Q |
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| T |
1096172 |
agatgaactccatgaagattaaaatgattcgatgtttcttctatccagttttgagtcgattcaaaactaactagaaactctctaacttgagtgaatccat |
1096073 |
T |
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| Q |
119 |
tcaaagagtagcttatgacttttgaatcattcaaattgattaaaaaataactcaaatctctctgacttgcatgaatcaattctgagagttagttatgact |
218 |
Q |
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| T |
1096072 |
tcaaagagtagcttatgacttttgaatcattcaaattgattaaaaaataactcaaatctctctgacttgcatgaatcgattccgagagttagttatgact |
1095973 |
T |
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| Q |
219 |
tttgaatagatttaagtttaagaaatttgtttttaaagaattgaaaatgcacataaaacccaaaagtaaaccaaaaatgattttcaccaaaacaagct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1095972 |
tttgaatagatttaagtttaagaaatttgtttttaaagaattgaaaatgcacataaaacccaaaagtaaaccaaaaatgattttcacgaaaacaagct |
1095875 |
T |
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