View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_low_22 (Length: 271)
Name: NF0555_low_22
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_22 |
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| [»] scaffold0416 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4475426 - 4475355
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4475426 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
4475355 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28619926 - 28619855
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28619926 |
aatttgtgaaacaaatttagttgataagttttgacttttttatcaacaacaaaattctaaatattatttctt |
28619855 |
T |
|
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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38694001 - 38693930
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
38694001 |
aatttgtgaaacaaatttagttgataagttttggcttttttgtcaacaacaaaattctaaatattatttctt |
38693930 |
T |
|
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Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39665552 - 39665623
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39665552 |
aatttatgaaacaaatttagttgataagttttgatttttttgtcaacaacaaaattctaaatattatttctt |
39665623 |
T |
|
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Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3996670 - 3996599
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3996670 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
3996599 |
T |
|
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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13855718 - 13855789
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13855718 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
13855789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41320986 - 41320915
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41320986 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
41320915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23396602 - 23396531
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23396602 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
23396531 |
T |
|
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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7548558 - 7548628
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttct |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7548558 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttct |
7548628 |
T |
|
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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6644019 - 6644090
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6644019 |
aatttgtgaaacaaatttagttgataaattttgacttttttgtcaacaacaaaattctaaatattatttctt |
6644090 |
T |
|
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 11146392 - 11146325
Alignment:
| Q |
5 |
tgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11146392 |
tgtgaaaagaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
11146325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5835 - 5769
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttttgacttttttgtcaacaacaaaattctaaatattatttctt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5835 |
aatttgtgaaacaaatttagttgataagtttt-----ttttgtcaacaacaaaattctaaatattatttctt |
5769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5253132 - 5253162
Alignment:
| Q |
1 |
aatttgtgaaacaaatttagttgataagttt |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5253132 |
aatttgtgaaacaaatttagttgataagttt |
5253162 |
T |
|
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