View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_low_23 (Length: 260)
Name: NF0555_low_23
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 51018020 - 51017813
Alignment:
| Q |
31 |
aaactcaactgtcttattaatgtcatcttagatgtaagtagatcattaccaagacttannnnnnncactctaatttgggcttaaaatcactacacatata |
130 |
Q |
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| T |
51018020 |
aaacttaactgtcttattaatgtcatcttagatgtaagtagatcattaccaagacttatttttttcactctaatttgggcttaaaatcactaca--tata |
51017923 |
T |
|
| Q |
131 |
ttcatgttaaattttgttttaatagacttcaaaaatgtatactagtcgtgtgtttggattgagttgggaggaggccagacttccgagtccacaccaatta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51017922 |
ttcatgttaaattttgttttaatagacttcaaaaatgtatactagtcgtgtgtttggattgagttgggaggaggccagacttccgagtccacaccaatta |
51017823 |
T |
|
| Q |
231 |
tttatttcat |
240 |
Q |
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|||||||||| |
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| T |
51017822 |
tttatttcat |
51017813 |
T |
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