View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0555_low_24 (Length: 252)

Name: NF0555_low_24
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0555_low_24
NF0555_low_24
[»] chr3 (16 HSPs)
chr3 (161-248)||(44436593-44436679)
chr3 (161-243)||(44436421-44436502)
chr3 (172-248)||(51315679-51315754)
chr3 (172-244)||(44585985-44586056)
chr3 (161-248)||(28944061-28944147)
chr3 (161-243)||(44585820-44585901)
chr3 (161-235)||(44624838-44624911)
chr3 (179-248)||(578608-578675)
chr3 (179-245)||(3916480-3916545)
chr3 (161-243)||(51315527-51315608)
chr3 (187-248)||(38957905-38957965)
chr3 (187-248)||(44433259-44433319)
chr3 (180-243)||(17773222-17773283)
chr3 (180-243)||(19074523-19074584)
chr3 (172-248)||(28712499-28712573)
chr3 (161-244)||(43747479-43747560)
[»] chr8 (9 HSPs)
chr8 (161-248)||(37813286-37813372)
chr8 (163-248)||(16982806-16982890)
chr8 (179-245)||(30539189-30539254)
chr8 (179-246)||(21486705-21486771)
chr8 (161-236)||(25143975-25144049)
chr8 (179-252)||(45177252-45177324)
chr8 (179-242)||(17071822-17071882)
chr8 (179-242)||(17576391-17576451)
chr8 (161-241)||(44101491-44101569)
[»] chr4 (22 HSPs)
chr4 (70-185)||(14016630-14016746)
chr4 (162-236)||(52865749-52865822)
chr4 (161-220)||(11983614-11983671)
chr4 (180-252)||(14060894-14060965)
chr4 (163-243)||(54855508-54855587)
chr4 (186-248)||(14449479-14449540)
chr4 (184-246)||(51362595-51362656)
chr4 (187-248)||(10059892-10059952)
chr4 (187-252)||(14016784-14016848)
chr4 (179-248)||(23759769-23759836)
chr4 (172-248)||(2836943-2837018)
chr4 (172-236)||(47999573-47999636)
chr4 (184-247)||(6207370-6207432)
chr4 (172-246)||(12719642-12719716)
chr4 (209-248)||(43074783-43074822)
chr4 (178-247)||(50769413-50769481)
chr4 (172-246)||(44356595-44356667)
chr4 (172-248)||(4796080-4796154)
chr4 (182-243)||(35393869-35393929)
chr4 (184-248)||(2016847-2016910)
chr4 (172-248)||(25909531-25909606)
chr4 (172-251)||(49185750-49185829)
[»] chr5 (15 HSPs)
chr5 (161-245)||(2974666-2974749)
chr5 (162-248)||(9852821-9852905)
chr5 (172-246)||(37897915-37897987)
chr5 (172-247)||(3333897-3333971)
chr5 (172-246)||(36798214-36798288)
chr5 (187-248)||(31080535-31080595)
chr5 (172-236)||(32391926-32391989)
chr5 (179-248)||(12406235-12406304)
chr5 (172-246)||(27904680-27904753)
chr5 (161-243)||(30603645-30603726)
chr5 (160-245)||(34320145-34320227)
chr5 (187-248)||(19131695-19131755)
chr5 (172-252)||(40276220-40276300)
chr5 (172-236)||(20629951-20630014)
chr5 (179-243)||(36798376-36798439)
[»] chr1 (9 HSPs)
chr1 (161-245)||(39642406-39642488)
chr1 (172-248)||(3377545-3377620)
chr1 (160-246)||(23220597-23220683)
chr1 (160-246)||(6569704-6569789)
chr1 (178-252)||(7579714-7579787)
chr1 (182-248)||(16874698-16874762)
chr1 (179-246)||(25085590-25085654)
chr1 (161-204)||(32294984-32295028)
chr1 (179-235)||(46572877-46572932)
[»] chr6 (4 HSPs)
chr6 (172-248)||(10727389-10727464)
chr6 (178-248)||(2853610-2853679)
chr6 (183-245)||(20474903-20474963)
chr6 (172-248)||(12766410-12766484)
[»] chr2 (18 HSPs)
chr2 (161-245)||(25411575-25411657)
chr2 (161-245)||(34100773-34100856)
chr2 (161-248)||(37431576-37431662)
chr2 (172-236)||(43028838-43028900)
chr2 (162-245)||(8857079-8857162)
chr2 (161-248)||(32969592-32969676)
chr2 (161-243)||(39918642-39918723)
chr2 (161-236)||(4925471-4925546)
chr2 (179-245)||(24472645-24472708)
chr2 (187-246)||(34760906-34760964)
chr2 (161-243)||(36195622-36195703)
chr2 (182-252)||(14943736-14943804)
chr2 (187-248)||(5470532-5470592)
chr2 (179-248)||(14489407-14489474)
chr2 (188-248)||(25445-25504)
chr2 (184-243)||(15022894-15022951)
chr2 (184-248)||(16043217-16043280)
chr2 (172-248)||(39918478-39918553)
[»] chr7 (12 HSPs)
chr7 (172-248)||(41243688-41243761)
chr7 (172-246)||(28350160-28350233)
chr7 (178-236)||(18504293-18504350)
chr7 (177-242)||(28350345-28350407)
chr7 (178-247)||(15029111-15029179)
chr7 (161-243)||(28472579-28472659)
chr7 (161-236)||(40872354-40872429)
chr7 (172-236)||(47909738-47909800)
chr7 (172-242)||(3381907-3381975)
chr7 (187-248)||(36903322-36903381)
chr7 (187-248)||(36903466-36903526)
chr7 (172-247)||(20184960-20185035)
[»] scaffold0011 (1 HSPs)
scaffold0011 (178-248)||(145403-145472)
[»] scaffold0328 (1 HSPs)
scaffold0328 (172-248)||(9456-9530)
[»] scaffold0041 (1 HSPs)
scaffold0041 (161-236)||(93853-93928)
[»] scaffold0062 (1 HSPs)
scaffold0062 (172-243)||(46120-46190)
[»] scaffold0015 (1 HSPs)
scaffold0015 (180-248)||(76914-76980)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 44436679 - 44436593
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||| |||||||||||    
T  44436679 cttaatagcagttttagccccctaagaaaaaaaactacaaaaccgc-cccctaagttttgcatctgtggcagttttggcccccaaggc 44436593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 44436421 - 44436502
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| | |||| |||||||| ||||||    
T  44436421 cttaatagcagttttagccccctaagaaaaaaaactacaaaaccgc-cccctaagttttgcaactgtagcagttttggccccc 44436502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 51315754 - 51315679
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||||||||||||| |||||||||||||  |||||||||||| | ||||||||||||| |||||||||||    
T  51315754 ttttggccccctaagaaaaaaaactacaaaaccgcc-ccctaagttttgcacctgtggcagttttggcccccaaggc 51315679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 44586056 - 44585985
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccca 244  Q
    |||| |||||||||||||||| |||||||||||||  ||||||||||||  |||||||||||||| |||||||    
T  44586056 ttttggccccctaagaaaaaaaactacaaaaccgc-cccctaagttttgcttctgtggcagttttggccccca 44585985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 28944061 - 28944147
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||||||||||||||||||||| |||||| ||  ||  |||||||||||| |  ||| |||||||| |||||||||||    
T  28944061 cttaatagcagttttagccccctaagaaaaaaaactacataattgc-cccctaagttttgcacatgtagcagttttggcccccaaggc 28944147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 44585820 - 44585901
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||  |||||| ||||| | |||| |||||||| ||||||    
T  44585820 cttaatagcagttttcgccccctaaggaaaaaaactacaaaaccgc-cccctaaattttgcaactgtagcagttttcgccccc 44585901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 44624911 - 44624838
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagttt 235  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| |  |||||||||| | |||| |||||||    
T  44624911 cttaatagcagttttcgccccctaagaaaaaaaactacaaaaccgcca-tctaagttttgcaactgtagcagttt 44624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 578675 - 578608
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||| |||||||||||||  |||||||||||  | |||||| |||||| |||||||||||    
T  578675 cccctaagaaaaaaaactacaaaaccgc--ccctaagtttttcacctgtggtagttttggcccccaaggc 578608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 3916480 - 3916545
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||| ||||||||| |||  | |||||||||| ||||||||||||||| ||||||||    
T  3916480 cccctaagaaaaaaaactacaaaatcgct-cactaagttttgcatctgtggcagttttggcccccaa 3916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 51315527 - 51315608
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||||||||||| ||||||||| |||| | | |||||||||||  |||||||||||| | |||| |||||||| ||||||    
T  51315527 cttaatagcagttttggccccctaacaaaataaattacaaaaccgc-cccctaagttttgcaactgtagcagttttggccccc 51315608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 38957905 - 38957965
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||||||  |||||||||||| || |||||||||||| |||||||||||    
T  38957905 aaaaaaaactacaaaaccgcc-ccctaagttttgcatttgtggcagttttggcccccaaggc 38957965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 44433319 - 44433259
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||||||  |||||||||||| || |||||||||||| |||||||||||    
T  44433319 aaaaaaaactacaaaaccgcc-ccctaagttttgcatatgtggcagttttggcccccaaggc 44433259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 17773222 - 17773283
Alignment:
Q  180 ccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||| ||||| |||||||||||||  |||||||||||| | ||||||||||||| ||||||    
T  17773222 ccctaaggaaaaaaactacaaaaccgc--ccctaagttttgcaactgtggcagttttggccccc 17773283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 19074523 - 19074584
Alignment:
Q  180 ccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||| ||||| |||||||||||||  |||||||||||| | ||||||||||||| ||||||    
T  19074523 ccctaaggaaaaaaactacaaaaccgc--ccctaagttttgcaactgtggcagttttggccccc 19074584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 28712499 - 28712573
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||||||||||||| ||||||||| |||  |||||||||||| |||||| |||||||| || ||||||||    
T  28712499 ttttggccccctaagaaaaaa-actacaaaatcgcc-ccctaagttttgcatctgtagcagttttagcacccaaggc 28712573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 43747560 - 43747479
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccca 244  Q
    |||||||||| |||||||||| ||  |||||| |||||||||||||  |||||||||||| || | |||||||||| |||||||    
T  43747560 cttaatagcaattttagccccttataaaaaaa-actacaaaaccgcc-ccctaagttttgcatttatggcagttttggccccca 43747479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 37813372 - 37813286
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||| |||||||||||    
T  37813372 cttaatagcagtttcagccccctaagaaaaaaaactacaaaaccgc-cccctaagttttgcatctgtggcagttttggcccccaaggc 37813286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 16982890 - 16982806
Alignment:
Q  163 taatagcagttttagccccctaagaa-aaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||  |||||||||||| ||||||| ||| |||||||||||||||    
T  16982890 taatagtagttttagccccctaagaaaaaaaaactacaaaaccgc-cccctaagttttgcatctgtgccag-ttttgcccccaaggc 16982806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 30539254 - 30539189
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||| ||||||||||||   |||||||||||| ||||||||||||||| ||||||||    
T  30539254 cccctaagaaaaaaaactacaaaaccgtc-ccctaagttttgcatctgtggcagttttggcccccaa 30539189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 21486705 - 21486771
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    ||||||||||||||||||||||||||||  |||||||||||| | |||||||| |||| ||| |||||    
T  21486705 cccctaagaaaaaacactacaaaaccgc-cccctaagttttgcacctgtggcatttttggcctccaag 21486771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 25143975 - 25144049
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||||||| ||||||||||||||||||||||| |||||||||  |   | |||||||||| |||||||||||||||    
T  25143975 cttaatagtagttttagccccctaagaaaaaaaactacaaaattg-gccactaagttttgcatctgtggcagtttt 25144049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 45177252 - 45177324
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggctaat 252  Q
    |||||||||||||| ||||||||| ||   |||||||||||| ||||||| ||||||| |||| ||||||||||    
T  45177252 cccctaagaaaaaaaactacaaaatcgtc-ccctaagttttgcatctgtgacagttttggccctcaaggctaat 45177324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 17071882 - 17071822
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccc 242  Q
    |||||||||||||| |||||||||||||  |||||||||||| | ||||| |||||||||||||    
T  17071882 cccctaagaaaaaa-actacaaaaccgc--ccctaagttttgcacctgtgacagtttttgcccc 17071822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 17576391 - 17576451
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccc 242  Q
    |||||||||||||| |||||||||||||  |||||||||||| | ||||| |||||||||||||    
T  17576391 cccctaagaaaaaa-actacaaaaccgc--ccctaagttttgcacctgtgacagtttttgcccc 17576451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 44101569 - 44101491
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccc 241  Q
    |||||||||||||||||| ||||||||||||| ||||||||| | |  || ||||||||| |||||| |||||||| ||||    
T  44101569 cttaatagcagttttagctccctaagaaaaaa-actacaaaatcac-cccttaagttttgcatctgtagcagttttggccc 44101491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 14016630 - 14016746
Alignment:
Q  70 ctaagtattttaaaatcttcataattattttatatcaaaatttatttattttgtcnnnnnnnnnnnntcaaaatttatttattttagact--acttaata 167  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||  ||||||||    
T  14016630 ctaagtattttaaagtcttaataattattttatatcaaaatttatttattttgtc-aaaaaaaaaaatcaaaatttatttattttagactagacttaata 14016728  T
Q  168 gcagttttagccccctaa 185  Q
    || |||||||||||||||    
T  14016729 gcggttttagccccctaa 14016746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 52865822 - 52865749
Alignment:
Q  162 ttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||||| ||||||||||| |||||||||||| ||||||||| ||| |||||||||||||  |||||| |||||||    
T  52865822 ttaataccagttttagcctcctaagaaaaaaaactacaaaagcgc-accctaagttttgcctctgtgacagtttt 52865749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 11983671 - 11983614
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttg 220  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||  ||||||||||||    
T  11983671 cttaatagcagttttcgccccctacgaaaaaaaactacaaaaccgc--ccctaagttttg 11983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 14060965 - 14060894
Alignment:
Q  180 ccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggctaat 252  Q
    ||||||||||||| |||||||||| |   |||||||||||  ||||||||||||||| |||||||||||||||    
T  14060965 ccctaagaaaaaaaactacaaaactgtc-ccctaagttttacatctgtggcagttttggcccccaaggctaat 14060894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 54855587 - 54855508
Alignment:
Q  163 taatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||  |||||||||||||| || | | |||||| ||||||    
T  54855587 taatatcagttttcgccccctaagaaaaaaaactacaaaaccgc-tccctaagttttgtaactttagaagttttggccccc 54855508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 14449540 - 14449479
Alignment:
Q  186 gaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||| |||||||||||||  |||||||||||| || |||||||||||| |||||||||||    
T  14449540 gaaaaaaaactacaaaaccgct-ccctaagttttgcatttgtggcagttttggcccccaaggc 14449479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 51362595 - 51362656
Alignment:
Q  184 aagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    ||||||||| |||||||||||||  |||||||||||| || |||||||||||| |||||||||    
T  51362595 aagaaaaaaaactacaaaaccgcc-ccctaagttttgcatatgtggcagttttggcccccaag 51362656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 10059952 - 10059892
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||||||| |||| ||||||    
T  10059952 aaaaaaaactacaaaaccgcc-ccctaagttttgcatctgtggcagttttggccctcaaggc 10059892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 14016784 - 14016848
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggctaat 252  Q
    |||||| |||||||||||||  || |||||||||||| |||||||||||| ||| |||||||||||    
T  14016784 aaaaaaaactacaaaaccgcc-ccttaagttttgtatttgtggcagttttggcctccaaggctaat 14016848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 23759836 - 23759769
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||||| ||||||| ||| |||||||    
T  23759836 cccctaagaaaaaa-actacaaaaccgtc-ccctaagttttgtatctgtgacagttttggcctccaaggc 23759769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 2836943 - 2837018
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||| ||||||||| |||||||||||||  |||||||||||| || ||||  |||||| |||||||||||    
T  2836943 ttttggcccccaaagaaaaaaaactacaaaaccgc-cccctaagttttgcatgtgtgagagttttggcccccaaggc 2837018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 47999573 - 47999636
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||| |||||||||||||||| |||||||||||||  || ||||||||  |||||||||||||||    
T  47999573 tttttgccccctaagaaaaaaaactacaaaaccgc-tccataagttttacatctgtggcagtttt 47999636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 6207432 - 6207370
Alignment:
Q  184 aagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaagg 247  Q
    ||||||||| |||||||||||||  |||||||||||| || ||||||| |||| ||||||||||    
T  6207432 aagaaaaaaaactacaaaaccgcc-ccctaagttttgcatttgtggcaattttggcccccaagg 6207370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 12719716 - 12719642
Alignment:
Q  172 ttttagccccctaagaaaaaaca-ctacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||| |||||||||||||||| | |||||||||| |  |||||||||||| ||||||||||||||| ||| |||||    
T  12719716 ttttggccccctaagaaaaaaaaactacaaaaccacc-ccctaagttttgcatctgtggcagttttggcctccaag 12719642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 43074822 - 43074783
Alignment:
Q  209 ccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  43074822 ccctaagttttgcatctgtggcagttttggcccccaaggc 43074783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 50769413 - 50769481
Alignment:
Q  178 ccccctaagaaaaaaca-ctacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaagg 247  Q
    ||||||||||||||| | ||||||||||||  |||||||||||| |||| |||||||||| ||||| ||||    
T  50769413 ccccctaagaaaaaaaaactacaaaaccgc--ccctaagttttgcatctatggcagttttagcccctaagg 50769481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 44356667 - 44356595
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||| ||| |||||||||||| | |||||||||||  |||||||||||| || |||||||||||| |||||||||    
T  44356667 ttttggccgcctaagaaaaaa-attacaaaaccgcc-ccctaagttttgcatatgtggcagttttggcccccaag 44356595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 4796080 - 4796154
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||| ||||||||||| ||||||||||  || || ||||||||| | |||| |||||||| |||||||||||    
T  4796080 ttttggccctctaagaaaaaaaactacaaaac--cacccataagttttgcaactgtagcagttttggcccccaaggc 4796154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 35393929 - 35393869
Alignment:
Q  182 ctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||||||| |||||||||||||  ||||| |||||||| |||| |||||||| ||||||    
T  35393929 ctaagaaaaaaaactacaaaaccgc-cccctaggttttgtaactgtagcagttttggccccc 35393869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 2016847 - 2016910
Alignment:
Q  184 aagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||| |||||||||| ||  |||||||||||| |  |||||||||||| |||||||||||    
T  2016847 aagaaaaaagactacaaaactgcc-ccctaagttttgcacatgtggcagttttggcccccaaggc 2016910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 25909531 - 25909606
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||||||||||||| |||| ||||||||  |||||||||||| |  |||||  ||||| |||||||||||    
T  25909531 ttttggccccctaagaaaaaaaactataaaaccgc-cccctaagttttgcacttgtggaggttttggcccccaaggc 25909606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 49185829 - 49185750
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttg-cccccaaggctaa 251  Q
    |||| |||||||||||||||| |||||||||||||  || ||||||||| | |||| | |||||| | |||||||||||||    
T  49185829 ttttggccccctaagaaaaaaaactacaaaaccgc-cccttaagttttgcaactgttgtagttttggccccccaaggctaa 49185750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 2974666 - 2974749
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||  |||||||||||| ||||||||||||||| ||||||||    
T  2974666 cttaatagcagttttagccccctaagaaaaaaaaaaacaaaaccgc-cccctaagttttgcatctgtggcagttttggcccccaa 2974749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 9852821 - 9852905
Alignment:
Q  162 ttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||| ||||||||||||||| ||||||||| |||  |||||||||||| ||||||||||||||| || ||||||||    
T  9852821 ttaataacagttttaaccccctaagaaaaaa-actacaaaatcgcc-ccctaagttttgcatctgtggcagttttggctcccaaggc 9852905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 37897987 - 37897915
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||| |||||||||||||||| |||||||||||||  |||||||||||| || |||||||||||| ||| |||||    
T  37897987 ttttggccccctaagaaaaaaaactacaaaaccgc--ccctaagttttgcatatgtggcagttttggcctccaag 37897915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 3333971 - 3333897
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaagg 247  Q
    |||| |||||||||||| ||| |||||||||||||  || ||||||||| || |||||||||||| ||||||||||    
T  3333971 ttttggccccctaagaagaaaaactacaaaaccgct-ccataagttttgcatatgtggcagttttggcccccaagg 3333897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 36798214 - 36798288
Alignment:
Q  172 ttttagccccctaagaaaaaaca-ctacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||| |||||||||||||||| | |||||||||| |  |||||||||||| ||||||||||||||| |||||||||    
T  36798214 ttttggccccctaagaaaaaaaaactacaaaaccacc-ccctaagttttgcatctgtggcagttttggcccccaag 36798288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 31080535 - 31080595
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| ||||||||||| |  |||||||||||| ||||||||||||||| |||||||||||    
T  31080535 aaaaaaaactacaaaaccacc-ccctaagttttgcatctgtggcagttttggcccccaaggc 31080595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 32391989 - 32391926
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    ||||||||||||||||||||| |||||||||||||  || ||||||||| || |||| |||||||    
T  32391989 ttttagccccctaagaaaaaaaactacaaaaccgc-cccttaagttttgcatgtgtgacagtttt 32391926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 12406304 - 12406235
Alignment:
Q  179 cccctaagaaaaaaca-ctacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||| | | ||||||||||  |||||||||||  ||||||||||||||| |||||||||||    
T  12406304 cccctaagaaaaaaaaacaacaaaaccgcc-ccctaagttttacatctgtggcagttttggcccccaaggc 12406235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 27904753 - 27904680
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||| ||||| |||||||||| |||||||||||||  |||||||||||| |  ||||||||||||  ||||||||    
T  27904753 ttttggccccgtaagaaaaaaaactacaaaaccgc-cccctaagttttgcacttgtggcagttttgtcccccaag 27904680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 30603645 - 30603726
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||| ||||||| ||||| |||||||||| | |||||||| ||  |||||||||||| | |||| |||||||| ||||||    
T  30603645 cttaataacagttttcgccccttaagaaaaaaaattacaaaactgcc-ccctaagttttgcaactgtagcagttttggccccc 30603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 34320227 - 34320145
Alignment:
Q  160 acttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    ||||||||| ||||||||||||||||||||||| | || |||||  |  |||||||||||  || |||||||||||| ||||||||    
T  34320227 acttaatagtagttttagccccctaagaaaaaa-aatagaaaacgcc--ccctaagttttacatttgtggcagttttggcccccaa 34320145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 19131755 - 19131695
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||||||  |||||||||||| ||||||| ||||||| ||||| |||||    
T  19131755 aaaaaaaactacaaaaccgcc-ccctaagttttgcatctgtgacagttttggccccgaaggc 19131695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 40276300 - 40276220
Alignment:
Q  172 ttttagccccctaagaaaaaaca-ctacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggctaat 252  Q
    ||||| ||||||||||||||| | |||||||||||   |||||||||||| || ||||||| ||||  ||||||||||||||    
T  40276300 ttttaaccccctaagaaaaaaaaactacaaaaccgtc-ccctaagttttgcatatgtggcaattttgacccccaaggctaat 40276220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 20630014 - 20629951
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||| ||||| |||||||||| |||||||||||||  |||||||||||| || ||||| ||||||    
T  20630014 ttttggccccttaagaaaaaaaactacaaaaccgc-cccctaagttttgcatttgtggaagtttt 20629951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 36798439 - 36798376
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    |||||||||||||| ||| |||||||||  |||||||||||| | |||| |||||||| ||||||    
T  36798439 cccctaagaaaaaaaactgcaaaaccgc-cccctaagttttgcaactgtagcagttttggccccc 36798376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 39642488 - 39642406
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| || |||||||||||| ||||||||    
T  39642488 cttaatagcagttttagccccctaagaaaaaa-actacaaaaccgc-cccctaagttttgcatttgtggcagttttggcccccaa 39642406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 3377545 - 3377620
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||||||||||||| |||||||||||||  |||||||||||| || |||||||||||| |||||||||||    
T  3377545 ttttggccccctaagaaaaaaaactacaaaaccgcc-ccctaagttttgcatttgtggcagttttggcccccaaggc 3377620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 23220597 - 23220683
Alignment:
Q  160 acttaatagcagttttagccccctaag-aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||||  || ||||||||| |  |||||| ||||| |||||||||    
T  23220597 acttaatagcagttttagcctcctaagaaaaaaaaactacaaaaccgc-cccttaagttttgcacatgtggcggttttggcccccaag 23220683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 6569789 - 6569704
Alignment:
Q  160 acttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    ||||||||| |||||||| ||||||||||||||  ||||||||||||  || ||||||||  || |||||||||||| |||| ||||    
T  6569789 acttaatagtagttttagtcccctaagaaaaaaatctacaaaaccgc-cccttaagttttacatttgtggcagttttggccctcaag 6569704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 7579714 - 7579787
Alignment:
Q  178 ccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggctaat 252  Q
    ||||||||||||||| |||||||||||||  | |||||||||| |  ||||||| ||||||||||||| ||||||    
T  7579714 ccccctaagaaaaaaaactacaaaaccgc-ccgctaagttttgcacttgtggcaatttttgcccccaaagctaat 7579787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 16874762 - 16874698
Alignment:
Q  182 ctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||||| |||||||||||||  || ||||||||| ||||||||||||||| || ||||||||    
T  16874762 ctaagaaaaaa-actacaaaaccgcc-ccataagttttgcatctgtggcagttttggctcccaaggc 16874698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 25085654 - 25085590
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||||||||||||||  |||||| ||||| ||| |||||||||| ||||||||||||| |||| ||||    
T  25085654 cccctaagaaaaaac--tacaaatccgcacccc-aagttttgtacctgtggcagttttggccctcaag 25085590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 32294984 - 32295028
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaa-acactacaaaacc 204  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||    
T  32294984 cttaatagcagttttcgccccctaagaaaaataaactacaaaacc 32295028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 46572877 - 46572932
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagttt 235  Q
    |||||||||||||| ||||||||||||   |||||||||||| || |||||||||||    
T  46572877 cccctaagaaaaaaaactacaaaaccg-tcccctaagttttgcatttgtggcagttt 46572932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 10727464 - 10727389
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||| |||||||||||    
T  10727464 ttttggccccctaagaaaaaaaactacaaaaccgcc-ccctaagttttgcatctgtggcagttttggcccccaaggc 10727389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 2853679 - 2853610
Alignment:
Q  178 ccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||||||||| |||||||||||||  |||||||||||  || |||||||||||| |||||||||||    
T  2853679 ccccctaagaaaaaaaactacaaaaccgc-cccctaagtttttcatatgtggcagttttggcccccaaggc 2853610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 20474963 - 20474903
Alignment:
Q  183 taagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||| ||||||||||  |  |||||||||||| ||||||||||||||| ||||||||    
T  20474963 taagaaaaaaaactacaaaacgcc--ccctaagttttgcatctgtggcagttttggcccccaa 20474903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 12766484 - 12766410
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| ||||||||| |||||| |||||||||||||  || ||||||||| | |||| |||||||| |||||||||||    
T  12766484 ttttggccccctaaaaaaaaa-actacaaaaccgcc-ccttaagttttgcaactgtagcagttttggcccccaaggc 12766410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 25411575 - 25411657
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||||||| |||||||||||||||  |||||||    
T  25411575 cttaatagcagttttagccccctaagaaaaaa-agtacaaaaccgc-cccctaagttttgcatctgtggcagttttcacccccaa 25411657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 34100773 - 34100856
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||||||||||||||||||||| |||| |||||||   |||||||||||| | |||| ||||||||  |||||||    
T  34100773 cttaatagcagttttagccccctaagaaaaaaaactataaaaccg-tcccctaagttttgcaactgtagcagttttgacccccaa 34100856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 37431576 - 37431662
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||||||||| | |||||||| ||||| ||||||||| |||  | |||||||||| || |||||||||||| |||||||||||    
T  37431576 cttaatagcagttttggtcccctaaggaaaaaaactacaaaatcgc-ccactaagttttgcatttgtggcagttttggcccccaaggc 37431662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 43028838 - 43028900
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||| |||||||||||||||| ||||||||||| |  |||||||||||| |||||||||||||||    
T  43028838 ttttggccccctaagaaaaaaaactacaaaacccc--ccctaagttttgcatctgtggcagtttt 43028900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 8857079 - 8857162
Alignment:
Q  162 ttaatagcagttttagccccctaag-aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    ||||||||||||||||| ||||||| |||||| | |||||||||||   ||||||||||| || |||||||||||| ||||||||    
T  8857079 ttaatagcagttttagctccctaagaaaaaaaaagtacaaaaccgc-ctcctaagttttgcatttgtggcagttttggcccccaa 8857162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 32969592 - 32969676
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |||  |||||||||||  || |||||||||||| || ||||||||    
T  32969592 cttaatagcagttttag-cccctaagaaaaaa-actacaaaatcgc-cccctaagtttttcatttgtggcagttttggctcccaaggc 32969676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 39918723 - 39918642
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||||||||| |  ||||||||||||||| |||||||||||||  |||||||||||| | |||| ||| |||| ||||||    
T  39918723 cttaatagcagttctctccccctaagaaaaaaaactacaaaaccgc-cccctaagttttgcaactgtagcaattttggccccc 39918642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 4925471 - 4925546
Alignment:
Q  161 cttaatagcagttttagccccctaag-aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    ||||||||||||||||  |||||||| |||||| ||||||||||||   |||||||||||| || ||||||||||||    
T  4925471 cttaatagcagttttaatcccctaagaaaaaaaaactacaaaaccg-tcccctaagttttgcatatgtggcagtttt 4925546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 24472708 - 24472645
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaa 245  Q
    |||||||||||||| ||||||||||| |   ||||||||||| ||||||||||||||| ||| ||||    
T  24472708 cccctaagaaaaaaaactacaaaacccc---cctaagttttgcatctgtggcagttttggccgccaa 24472645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 34760906 - 34760964
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||||| |||||||||||||  |||||||||||| || |||||||||||| |||||||||    
T  34760906 aaaaaaaactacaaaaccgcc-ccctaagttttgcatatgtggcagttttggcccccaag 34760964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 36195622 - 36195703
Alignment:
Q  161 cttaatagcagttttagccccctaag-aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||  ||||||| |||| | |||| |||||||| ||||||    
T  36195622 cttaataacagttttagccccctaagaaaaaaaaactacaaaaccgc-cccctaag-tttgcaactgtagcagttttggccccc 36195703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 14943804 - 14943736
Alignment:
Q  182 ctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggctaat 252  Q
    ||||||||||| |||||||||||||  | |||||||||| | |||||||| |||| |||||||||||||||    
T  14943804 ctaagaaaaaa-actacaaaaccgcc-ctctaagttttgcacctgtggcatttttggcccccaaggctaat 14943736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 5470592 - 5470532
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||||||  || ||||||||  ||||||||||||||| |||||||||||    
T  5470592 aaaaaaaactacaaaaccgcc-ccttaagttttacatctgtggcagttttggcccccaaggc 5470532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 14489474 - 14489407
Alignment:
Q  179 cccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||||||||||| ||||||||| | |  |||||||||||| | ||||||||||||| |||||||||||    
T  14489474 cccctaagaaaaaa-actacaaaatcacc-ccctaagttttgcaactgtggcagttttggcccccaaggc 14489407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 25445 - 25504
Alignment:
Q  188 aaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||| |||||||||||||  |||||||||||| | |||||||||||||  ||||||||||    
T  25445 aaaaaaactacaaaaccgcc-ccctaagttttgcacctgtggcagttttgacccccaaggc 25504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 15022894 - 15022951
Alignment:
Q  184 aagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||||| |||||||||||||  |||||| ||||| || |||||||||||| ||||||    
T  15022894 aagaaaaaaaactacaaaaccgc--ccctaaattttgcatttgtggcagttttggccccc 15022951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 16043280 - 16043217
Alignment:
Q  184 aagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||| ||| |||||| ||||||  ||||| |||||| ||||||||||||||| |||||||||||    
T  16043280 aagaagaaaaactacagaaccgcc-ccctatgttttgcatctgtggcagttttggcccccaaggc 16043217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 39918478 - 39918553
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||||||||||||||| ||| ||||| |||  | |||||||||| || |||||| ||||| |||||||||||    
T  39918478 ttttggccccctaagaaaaaaaactgcaaaatcgcc-cgctaagttttgcatatgtggctgttttggcccccaaggc 39918553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 41243688 - 41243761
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||| || |||||||||||||| |||||||||    
T  41243688 ttttagccccctaagaaaaaa-actacaaaaccgc--ccctaagttttgcatttgtggcagtttttgtccccaaggc 41243761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 28350160 - 28350233
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaag 246  Q
    |||| |||||||||||||||| |||||||||||||  ||||||||||||   ||||||||||||| |||||||||    
T  28350160 ttttggccccctaagaaaaaaaactacaaaaccgc-cccctaagttttgcccctgtggcagttttggcccccaag 28350233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 18504293 - 18504350
Alignment:
Q  178 ccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    ||||||||||||||| |||||||||||||  |||||||||||| || ||||||||||||    
T  18504293 ccccctaagaaaaaatactacaaaaccgc-cccctaagttttgcatatgtggcagtttt 18504350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 28350407 - 28350345
Alignment:
Q  177 gccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccc 242  Q
    |||||||||||||||| |||||||||||||  |||||||||||| | ||||||||||||| |||||    
T  28350407 gccccctaagaaaaaa-actacaaaaccgc--ccctaagttttgcacctgtggcagttttggcccc 28350345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 15029111 - 15029179
Alignment:
Q  178 ccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaagg 247  Q
    |||||||| |||||| |||||||||||||  |||||||||||| |  |||||||||||| ||||||||||    
T  15029111 ccccctaataaaaaaaactacaaaaccgcc-ccctaagttttgcacatgtggcagttttggcccccaagg 15029179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 28472659 - 28472579
Alignment:
Q  161 cttaatagcagttttagccccctaagaaaaaaca-ctacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||||||||||||| ||||| |||||||||| | ||||||||||||  |||||||||||| | |||| |||||||| ||||||    
T  28472659 cttaatagcagttttcgcccc-taagaaaaaaaaactacaaaaccgc--ccctaagttttgcaactgtagcagttttggccccc 28472579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 40872429 - 40872354
Alignment:
Q  161 cttaatagcagttttagccccctaagaa-aaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||   |||||||||||| || ||||||||||||    
T  40872429 cttaattgcagttttagccctctaagaaaaaaaaactacaaaaccg-tcccctaagttttgcatatgtggcagtttt 40872354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 47909738 - 47909800
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    ||||||||||||||||||||| ||||||||| |||  |||||||||||| |||||||||| ||||    
T  47909738 ttttagccccctaagaaaaaa-actacaaaatcgc-cccctaagttttgcatctgtggcaatttt 47909800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 3381907 - 3381975
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccc 242  Q
    |||||| ||| |||||||||| |||||||||||||  |||||||||||| || |||||||||||| |||||    
T  3381907 ttttagtcccataagaaaaaa-actacaaaaccgcc-ccctaagttttgcatatgtggcagttttggcccc 3381975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 36903322 - 36903381
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||||||  |||||||||||  ||||||||||||||| |||| ||||||    
T  36903322 aaaaaaaactacaaaaccgc--ccctaagttttccatctgtggcagttttggccctcaaggc 36903381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 36903526 - 36903466
Alignment:
Q  187 aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||||| |||||||||| ||| |||||||||||| | |||| |||||||| |||||||||||    
T  36903526 aaaaaaaactacaaaactgca-ccctaagttttgcaactgtagcagttttagcccccaaggc 36903466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 20184960 - 20185035
Alignment:
Q  172 ttttagccccctaag-aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaagg 247  Q
    ||||||||||||||| |||||| |||||||||||||   | ||||||||| || |||| ||||||| ||||||||||    
T  20184960 ttttagccccctaagaaaaaaaaactacaaaaccgc-ctcttaagttttgcatatgtgccagttttggcccccaagg 20185035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 145403 - 145472
Alignment:
Q  178 ccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||||||||||| |||||||| ||||  || ||| ||||| ||||||||||||||| |||||||||||    
T  145403 ccccctaagaaaaaaaactacaaagccgcc-ccttaaattttgcatctgtggcagttttggcccccaaggc 145472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 9456 - 9530
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    |||| |||| ||||||||||| ||||||||||||   |||||||||||| || |||||||||||| |||||||||||    
T  9456 tttttgccctctaagaaaaaa-actacaaaaccgtc-ccctaagttttgcatatgtggcagttttagcccccaaggc 9530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 93853 - 93928
Alignment:
Q  161 cttaatagcagttttagccccctaag-aaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttt 236  Q
    |||||| ||||||||||||| ||||| |||||| ||||||||||||   |||||||||||| || ||||||||||||    
T  93853 cttaattgcagttttagccctctaagaaaaaaaaactacaaaaccg-tcccctaagttttgcatatgtggcagtttt 93928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 46120 - 46190
Alignment:
Q  172 ttttagccccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgccccc 243  Q
    ||||| ||||||||||||| | |||||||||||||  |||||||||||| | |||| |||||||| ||||||    
T  46120 ttttaaccccctaagaaaagaaactacaaaaccgc-cccctaagttttgcaactgtagcagttttggccccc 46190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 76914 - 76980
Alignment:
Q  180 ccctaagaaaaaacactacaaaaccgcaaccctaagttttgtatctgtggcagtttttgcccccaaggc 248  Q
    ||||||| ||||| |||||||| ||||  |||||||||||| || |||||||| |||||||||||||||    
T  76914 ccctaaggaaaaaaactacaaagccgcc-ccctaagttttgcatttgtggcag-ttttgcccccaaggc 76980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 873 times since January 2019
Visitors: 3657