View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0555_low_26 (Length: 237)

Name: NF0555_low_26
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0555_low_26
NF0555_low_26
[»] chr1 (1 HSPs)
chr1 (1-165)||(2509835-2509999)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 2509835 - 2509999
Alignment:
1 taaacaaacgaataattcttgattatttgatatgcctggtttagattaaaagctagaattatctgacctatataaactttgaaactgttttttaagtggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2509835 taaacaaacgaataattcttgattatttgatatgcctggtttaaattaaaagctagaattatctgacctatataaactttgaaactgttttttaagtggt 2509934  T
101 aatccaattaccttaataattgcttttaagagattgatttctcctaaagggatgttctttcattc 165  Q
    ||||||||||||||||||||||||   || |||||||||| ||||||||||||||||||||||||    
2509935 aatccaattaccttaataattgctaccaaaagattgatttgtcctaaagggatgttctttcattc 2509999  T

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