View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_low_3 (Length: 622)
Name: NF0555_low_3
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 49545472 - 49545991
Alignment:
| Q |
1 |
agtgtgaggtgctactgaacattctttttaccaacaatgatagcccttcttgcccttgcacatcaactagtgaggaaaatgaagaaaataaagagaagct |
100 |
Q |
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| T |
49545472 |
agtgtgaggtgctactgaacattctttttaccaacaatgatagcccttcttgcccttgcacatcaactagtgaggaaaatgaagaaaataaagagaagct |
49545571 |
T |
|
| Q |
101 |
gatgcaggttcctgaagaaattgctgaaattgaaaatatggagaatgtgctcatcaagctaactttatcagcattgcgtaccttggaagaaattcgcggt |
200 |
Q |
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| T |
49545572 |
gatgcaggttcctgaagaaattgctgaaattgaaaatatggagaatgtgctcatcaagctaactttatcagcattgcgtaccttggaagaaattcgcggt |
49545671 |
T |
|
| Q |
201 |
caaagctcaacagtaagcattttctatttagtctttgtaattttgaaaggtgatacaactggtacatgtatgagttttgctcatgtatgcggaatttttg |
300 |
Q |
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| T |
49545672 |
caaagctcaacagtaagcattttctatttagtctttgtaattttgaaaggtgatacaactggtacatgtatgagttttgctcatgtatgcggaatttttg |
49545771 |
T |
|
| Q |
301 |
cagaagcaaggggtaaaaactaaaacgtcaggtgaagcttgtggagacaaggaaaaggtagcacattcatagaatggatcctgaagctactcctcttggc |
400 |
Q |
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| T |
49545772 |
cagaagcaaggggtaaaaactaaaacgtcaggtgaagcttgtggagacaaggaaaaggtagcacattcatagaatggatcctgaagctactc-------g |
49545864 |
T |
|
| Q |
401 |
tcttagtcaaaataatctgaaccgtctttaagagatatcttactattagcatcaattatggctggtgaattgtgatcacctgaatatttatttatactgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545865 |
tcttagtcaaaataatctgaaccgtctttaagagatatcttactattagcatcaattatggctggtgaattgtgatcacctgaatatttatttatactgt |
49545964 |
T |
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| Q |
501 |
tctagatgaataactaaataagtagtg |
527 |
Q |
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| T |
49545965 |
tctagatgaataactaaataagtagtg |
49545991 |
T |
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