View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0555_low_6 (Length: 490)

Name: NF0555_low_6
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0555_low_6
NF0555_low_6
[»] chr2 (4 HSPs)
chr2 (29-476)||(3219712-3220157)
chr2 (29-275)||(15985431-15985677)
chr2 (417-454)||(15985932-15985969)
chr2 (300-359)||(15985680-15985738)
[»] chr8 (1 HSPs)
chr8 (77-203)||(23729106-23729232)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 29 - 476
Target Start/End: Complemental strand, 3220157 - 3219712
Alignment:
Q  29 atgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacga 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220157 atgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacga 3220058  T
Q  129 atcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgcacggatata 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220057 atcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgcacggatata 3219958  T
Q  229 attttgttgcagaaagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgcagaaagagccattgg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219957 attttgttgcagaaagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgcagaaagagccattgg 3219858  T
Q  329 aaagccgcaagtggggggaaatgatgatattgcaaaaagtttagaattttttacatgagctttactgcagcgctatctgaccactatcagtagtgctact 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219857 aaagccgcaagtggggggaaatgatgatattgcaaaaagtttagaa--ttttacatgagctttactgcagcgctatctgaccactatcagtagtgctact 3219760  T
Q  429 ctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagcc 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219759 ctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagcc 3219712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 29 - 275
Target Start/End: Original strand, 15985431 - 15985677
Alignment:
Q  29 atgatgcacatctacatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacga 128  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||| ||| || ||||| ||    
T  15985431 atgatgcacatctacatctgatggtttttccagtacacacaagatagaccatgcaaagttgaaagtgggtcaaattggagaacctaaactccgatcatga 15985530  T
Q  129 atcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgcacggatata 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  ||||| | ||||||| |||||| ||||||||||||||||||||||||||||      
T  15985531 atcgatgaatattttataggtagtccatacaaggaaaacaacatgcgaagggcgccgctgctcaatatctttgactaaatagctctgatgcacggatagc 15985630  T
Q  229 attttgttgcagaaagggccgctggaaagccgcaaggtgaggatggc 275  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  15985631 attttgttgtagaaagggctgctggaaagccacaaggtgaggatggc 15985677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 15985932 - 15985969
Alignment:
Q  417 agtagtgctactctaaacttcaatgcaaaatggggttt 454  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15985932 agtagcgctactctaaacttcaatgcaaaatggggttt 15985969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 15985680 - 15985738
Alignment:
Q  300 cctggaaaggttgcagaaagagccattggaaagccgcaagtggggggaaatgatgatatt 359  Q
    ||| |||||||||||||||| |||| ||||||||||||||  |||||||| |||||||||    
T  15985680 ccttgaaaggttgcagaaagggccaatggaaagccgcaag-agggggaaacgatgatatt 15985738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 23729232 - 23729106
Alignment:
Q  77 ccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaatattttataggtagtcgatacaaggaaaacaacatgaaa 176  Q
    ||||||||||| |||||||| |  | | ||||||||| ||||||||||||||||| |||| || ||| ||||||  | | |||||| |||||||||||||    
T  23729232 ccatgcaaagtggaaagtgggtgtagtgggagaaccctaaatctgatcacgaatcaatgagtactttgtaggtaacccacacaaggcaaacaacatgaaa 23729133  T
Q  177 agggtgtcgctgcttaatatccttgac 203  Q
    ||||  | |||||| ||| ||||||||    
T  23729132 agggcattgctgctcaatttccttgac 23729106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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