View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_low_7 (Length: 445)
Name: NF0555_low_7
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 18200826 - 18201230
Alignment:
| Q |
12 |
acagatgcatcatatttcttctaggggacgattgagatcaagatatggaaacttttccaggttgctaggttctccaacaacagtgacattttctgacatt |
111 |
Q |
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| T |
18200826 |
acagatgcatcatatttcttctgggggacgattgagatcaagatatggaaacttttccaggttgctaggttctccaacaacagtgacattatctgacatt |
18200925 |
T |
|
| Q |
112 |
gatgcaccattagcacttgttgttgctaggttgctaggttctccgtctgtaattaccatatcgaaagttcctaaaacaatctgatggaaaaagagaaact |
211 |
Q |
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| T |
18200926 |
gatgcaccattagcacttgttgttgctaggttgctaggttcaccgtctgtaattaccatatcgaaagttcccaaaacaatctgatggaaaaagagaaact |
18201025 |
T |
|
| Q |
212 |
ttgagtaagtgtgtgacaatggctatcaaatcaatgcaacataaatattaatcaataaataatttctaaatggacaacatggaaatggaaggaattaaca |
311 |
Q |
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| T |
18201026 |
ttgagtaagtgtgtgacaatggctatcaaatcaatgcaacataaatattaatcaataaataatttctaaatggacaacatggaaatggaaggaattaact |
18201125 |
T |
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| Q |
312 |
ataagtannnnnnnacaaccaggtataaaattttctcagttgtttagttcagactaatcttcgtttaggaatctattaaacatacaaggtcatttgccac |
411 |
Q |
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| T |
18201126 |
ataagtatttttttacaaccaggtataaaattttctcagttgtttagttcagactaatcttcgtttagaaatctattaaacatacaaggtcatttgcgac |
18201225 |
T |
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| Q |
412 |
gtcac |
416 |
Q |
| |
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| T |
18201226 |
gtcac |
18201230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 20344394 - 20344456
Alignment:
| Q |
190 |
atctgatggaaaaagagaaactttgagtaagtgtgtgacaatggctatcaaatcaatgcaaca |
252 |
Q |
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| T |
20344394 |
atctaatggaaaaagagaaagttttagtaagtgtgtaacaatggatattaaaacaattcaaca |
20344456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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