View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0555_low_8 (Length: 435)
Name: NF0555_low_8
Description: NF0555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0555_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 34819345 - 34819181
Alignment:
| Q |
29 |
agttgagaagtcatgttgttatacctagatcttgatctaagtcatatgtcgtcattcaagattgttagggacaaggagctggtcaataagatctgattat |
128 |
Q |
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| T |
34819345 |
agttgagaagtcatgttgttatacctagatcttgatctaagtcatctgtcgtcaatcaagattgttagggacaaggagctggtcaataagacctgattat |
34819246 |
T |
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| Q |
129 |
gcttttgtaatggtcatattggtgtaaataagacctgaataatcccttgtaatggtcttttgagg |
193 |
Q |
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| T |
34819245 |
gcttttgtaatggtcatattggtgtaaataagacctgattaatcccttgtaatggtcttttgagg |
34819181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 320 - 420
Target Start/End: Complemental strand, 34806556 - 34806456
Alignment:
| Q |
320 |
gttttagagtgactttttcactttccattataccctttaaccaatttgtctataagattgctacattgtannnnnnnaaggaagcatgttatatttttag |
419 |
Q |
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| T |
34806556 |
gttttagagtgactttttcacttcccattatacccttaaaccaagttgtctataagattgctacattgtatttttttaaggaagaatgttatatttttag |
34806457 |
T |
|
| Q |
420 |
t |
420 |
Q |
| |
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| |
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| T |
34806456 |
t |
34806456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 34806673 - 34806603
Alignment:
| Q |
194 |
aattttgataaattgaggacctcgtgtggttattcgttttatattcagggactaaattgattattatcctg |
264 |
Q |
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| T |
34806673 |
aattttgataaattgaggaactcatgtggttattcgttttatattcagggactaaattgactattaccctg |
34806603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 7534014 - 7534073
Alignment:
| Q |
329 |
tgactttttcactttccattataccctttaaccaatttgtctataagattgctacattgt |
388 |
Q |
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|||| ||||||||| | ||||||||||| ||| ||||||||||||||| |||||||||| |
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| T |
7534014 |
tgaccttttcacttccaattatacccttgaacaaatttgtctataagaaagctacattgt |
7534073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 34303551 - 34303611
Alignment:
| Q |
326 |
gagtgactttttcactttccattataccctttaaccaatttgtctataagattgctacatt |
386 |
Q |
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| T |
34303551 |
gagtgactttttcactttcaattatacccttaaataaatttttctacaagaattctacatt |
34303611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 47936091 - 47936135
Alignment:
| Q |
329 |
tgactttttcactttccattataccctttaaccaatttgtctata |
373 |
Q |
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||||||||||||||||||||||| |||| ||| |||||| ||||| |
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| T |
47936091 |
tgactttttcactttccattatatccttaaactaatttgcctata |
47936135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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