View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556-INSERTION-1 (Length: 287)
Name: NF0556-INSERTION-1
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-1 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 38 - 284
Target Start/End: Complemental strand, 5783530 - 5783284
Alignment:
| Q |
38 |
aatttatggcataattgaaattgaaacagtcatggatatgcttctttcactatcacacctttcactgacctccaaatttcggacatatatattttcatat |
137 |
Q |
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| T |
5783530 |
aatttatggcataattgaaattgaaacagtcctggatatgcttctttcactatcacacctttcactgacctccaaatttcggacatatatattttcatat |
5783431 |
T |
|
| Q |
138 |
tatggagaagaattggtcgatcggtcaagaaccaacccaccaaacacaatttgggatcatgttacgattcatcaacctcctcctcaatatcgaaactgag |
237 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5783430 |
tatggagatgaattggtcgatcggtcaagaacctacccaccaaacacaatttgggatcatgttacgattcatcaacctcctcctcaatatcgaaactgag |
5783331 |
T |
|
| Q |
238 |
acctcataattactcagatttaaatcctccaaatttatttatgtcat |
284 |
Q |
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| T |
5783330 |
acctcatcatcacttaaatttaaatcctccaaatttatttatgtcat |
5783284 |
T |
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