View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556-INSERTION-10 (Length: 897)
Name: NF0556-INSERTION-10
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-10 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 213 - 892
Target Start/End: Original strand, 51000785 - 51001455
Alignment:
| Q |
213 |
catccggataaaatagcaattaacaacgtaagaaccatgctgaatattctttgtaaaaatt-caatgatataaa-cccttgatcctaaacacgggattac |
310 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
51000785 |
catctggataaaatagcaattaacaacgtaagaaccatgctgaatattctttgtaaaaattacaatgatataaaacccttgatcctaaacacgggattac |
51000884 |
T |
|
| Q |
311 |
aaaaactcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactggaacactaccatcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51000885 |
aaaaactcactcatcaagcatccgataaactctcctccgaaagtttgcattgtcctcaccacgagcatagaagcaatgcaagactgcaacactaccatcc |
51000984 |
T |
|
| Q |
411 |
tacattgaacaatagaaccaataagttaggcaactcatgagaccaaagtaaaatgcaaactaagggagaaaaatggcaccagacaacatacagatattaa |
510 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51000985 |
tacattgaacaatagaaccaataag--------------agaccaaagtaaaatgcaaattaagggagaaaaatggcaccagacaacatacagatattaa |
51001070 |
T |
|
| Q |
511 |
aaacaggagactggaacctcactgttcttttctggagaaccactttcagataagttcgtttgatacaaccgtcaaaatgtaagtttcataaaagaaggca |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51001071 |
aaacaggagactggaacctcactgttcttttctggagaaccactttcagataagttcgtttgatacaaccgttaaaatgtaagtttcataaaagaaggca |
51001170 |
T |
|
| Q |
611 |
aaacaa-ggggaagcacttcttaatatgtttattttatctcaacattagcaatcttgatacatatagcatttacaactaataaaatgaacaacacacctt |
709 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51001171 |
aaacaatggggaagcacttcttaatatgtttattttatctcaacattagcaatcttgatacatatagcatttacaactaataaaatgaacaacacacctt |
51001270 |
T |
|
| Q |
710 |
caactttatatgaccttctcctatcttgcc-acnnnnnnncttcttccaacagtagccatcgtttcgaaagaatttgactgtgtttcgatcaaataataa |
808 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51001271 |
caactttatatgaccttctcctatcttgcctactttttttcttcttccaacagtagccatcgtttcgaaagaatttgactgtgtttcgatcaaataataa |
51001370 |
T |
|
| Q |
809 |
tagtgaccccgctg-aaaaaagtgaacatgtcaaaattattactccatcttcgtaccaagcatgtgtacgaattgtagctaacac |
892 |
Q |
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||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51001371 |
tagtgacccggctgaaaaaaaatgaacatgtcaaaattattactccatcttcgtaccaagcatgtgtacgaattgtagctaacac |
51001455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 51000578 - 51000756
Alignment:
| Q |
8 |
catacctctccgtaatgcacgaggacaatgtccttgaactgcctgcaattcaaaagaatatgtttaagttgattttttattttatttatcactataacca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51000578 |
catacctctccgtaatgcacgaggacaatgtccttgaactgcctgcaattcaaaagaatatgtttaagttgattttttattttatttatcactataacca |
51000677 |
T |
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| Q |
108 |
tgtaaaaagggcatgaacacatggtgcaaccttgcaaggttcaggcttgaattaagactcagtctattactttctctaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51000678 |
tgtaaaaagggcatgaacacatggtgcaaccttgcaaggttcaggcttgaattaagactcagtctattactttctctaa |
51000756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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