View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0556-INSERTION-11 (Length: 209)
Name: NF0556-INSERTION-11
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-11 |
 | |
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| [»] chr7 (13 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 2134325 - 2134119
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2134325 |
caacagtctttcagggaaaattccccaacagttggcacaaattacctttttgcagttcttaaatttgtcctttaacaatctcacaggtcctataccacaa |
2134226 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2134225 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggaggtcctt |
2134126 |
T |
|
| Q |
203 |
ctacctc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
2134125 |
ctacctc |
2134119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 2064746 - 2064540
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2064746 |
caacagtctttcagggaaaattcctcaacagttggctgaaatcacctttttggagttcttaaatgtgtcatttaacaatctcacaggtcctataccacaa |
2064647 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
2064646 |
aataatcagttttctacattcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttaaagaagtgtatagatcatgcagggcctt |
2064547 |
T |
|
| Q |
203 |
ctacctc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
2064546 |
ctacctc |
2064540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 2071854 - 2071651
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2071854 |
caacagtctttcagggaaaattccccaacagttggcacaaatcacctttttggaattcttaaatgtgtcctttaacaatctcacgggtccaataccacaa |
2071755 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
2071754 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaaccaaggtttgtgtggggatcagttggtgaagaagtgtatagatcatgcagggcctt |
2071655 |
T |
|
| Q |
203 |
ctac |
206 |
Q |
| |
|
|||| |
|
|
| T |
2071654 |
ctac |
2071651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 2124928 - 2124725
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2124928 |
caacagtctttcaggaaaaattccccaacagttggcagaaatcacctttttggagtacttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
2124829 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2124828 |
aataatcagttttctacattcaaagatgattcatttgagggtaaccaaggtttgtatggggatcagttgttgaagaagtgtatagatcatggagggcctt |
2124729 |
T |
|
| Q |
203 |
ctac |
206 |
Q |
| |
|
|||| |
|
|
| T |
2124728 |
ctac |
2124725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 2103855 - 2103652
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2103855 |
caacagtctttcagggaaaattcccgaacagttggcagaaatcacctttttggagtacttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
2103756 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| || |||||||| |
|
|
| T |
2103755 |
aataatcagttttctacattcaaaggtgattcatttgagggtaaccaaggtctgtgtggggatcagctgttaaagaagtgtatagatcctgcagggcctt |
2103656 |
T |
|
| Q |
203 |
ctac |
206 |
Q |
| |
|
|||| |
|
|
| T |
2103655 |
ctac |
2103652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 2097558 - 2097358
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2097558 |
caacagtctttcaggaaaaattcccaaacagttggcagaaatcacctttttggagtacttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
2097459 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
2097458 |
aataatcagttttccacattcaaagatgattcatttgagggtaaccaaggtctgtgtggggatcaattggtgaagaagtgtatagatcatgcagggcctt |
2097359 |
T |
|
| Q |
203 |
c |
203 |
Q |
| |
|
| |
|
|
| T |
2097358 |
c |
2097358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 2246946 - 2247149
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| ||||| ||||||||| | | |||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
2246946 |
caacagtctttcagggaaaataccccaacagttggcacaaatcacctttttggaatacttaaatgtgtcttttaacaatctcacaggtcctataccagaa |
2247045 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
2247046 |
cataatcagttttctacattcaaaggtgattcatttgagggtaaccaaggtttgtgtggggatcagttattgaagaaatgtatagatcatgcagggcctt |
2247145 |
T |
|
| Q |
203 |
ctac |
206 |
Q |
| |
|
|||| |
|
|
| T |
2247146 |
ctac |
2247149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 2137442 - 2137236
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2137442 |
caacagtctttcaggaaaaattccccaacagttggcagaaatcacctttttggcgttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
2137343 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| | | |||| |
|
|
| T |
2137342 |
aataatcagttttctacattcaaaagtgattcatttgagggtaaccaaggattgtgtggggatcagctgttgaagaagtgtaaagatcatgcaagacctt |
2137243 |
T |
|
| Q |
203 |
ctacctc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
2137242 |
ctacctc |
2137236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 2055456 - 2055253
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||| | |||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2055456 |
caacagtctttcagggaaagttccctaacagttgacagaaatcaccattttggagttcttaaatgtgtcctttaacaatctcagaggtcctataccacaa |
2055357 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||| ||||||| ||| || |||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2055356 |
aataatcagttttctacattcaaagatgactcgtttgagggtaatcaagatctgtgtggtgatcagttgttaaagaagtgtatagatcatgcagggcctt |
2055257 |
T |
|
| Q |
203 |
ctac |
206 |
Q |
| |
|
|||| |
|
|
| T |
2055256 |
ctac |
2055253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 2693133 - 2693336
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||| |||| ||||||||| ||| |||||||||||||||||| || |||| |||||||||||||||| |
|
|
| T |
2693133 |
caacagtctctctgggaaaattccacaacagttggctgaaatcacctttttggagtacttaaatgtgtcctttaataaactcagaggtcctataccacaa |
2693232 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtgattcatttgagggtaatcaaggtctgtgtggggatcagttgttgaagaagtgtatagatcatggagggcctt |
202 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| || |||||||| |
|
|
| T |
2693233 |
aataatcagttttctacattcaaaggtgattcatttgagggtaaccaaggtctgtgtggggatcagctgttaaagaagtgtatagatcctgcagggcctt |
2693332 |
T |
|
| Q |
203 |
ctac |
206 |
Q |
| |
|
|||| |
|
|
| T |
2693333 |
ctac |
2693336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 2121536 - 2121409
Alignment:
| Q |
3 |
caacagtccttcagggaaaattccccaacagttggcccaaattacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaa |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||| | | |||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
2121536 |
caacagtctttcagggaaaattccccaacagttggcacaaatcacctttttggaatacttaaatgtgtcatttaacaatcttacaggtcctataccacaa |
2121437 |
T |
|
| Q |
103 |
aataatcagttttctacgttcaaaggtg |
130 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
2121436 |
aataatcagttttctacattcaaaggtg |
2121409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 1698114 - 1698259
Alignment:
| Q |
44 |
ttacctttttgcagttcttaaatgtgtcctttaacaatctcacaggtcctataccacaaaataatcagttttctacgttcaaaggtgattcatttgaggg |
143 |
Q |
| |
|
||||||||||| ||||| | ||||||||||| ||||||||| ||||||||||||| || ||| | ||||| ||||| || ||| | |||||||||| || |
|
|
| T |
1698114 |
ttacctttttggagttccttaatgtgtccttcaacaatctctcaggtcctataccgcagaatcagcagttctctacatttcaagataattcatttgaagg |
1698213 |
T |
|
| Q |
144 |
taatcaaggtctgtgtggggatcagttgttgaagaagtgtatagat |
189 |
Q |
| |
|
|| ||||| ||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
1698214 |
caaccaaggcttgtgtggggatcaactgtcgaagaagtgcatagat |
1698259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 2121411 - 2121363
Alignment:
| Q |
158 |
gtggggatcagttgttgaagaagtgtatagatcatggagggccttctac |
206 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| || |||||||||||| |
|
|
| T |
2121411 |
gtggggatcagctgttaaagaagtgtatagatcctgcagggccttctac |
2121363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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