View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0556-INSERTION-14 (Length: 874)

Name: NF0556-INSERTION-14
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0556-INSERTION-14
NF0556-INSERTION-14
[»] chr5 (12 HSPs)
chr5 (215-697)||(1954040-1954522)
chr5 (692-871)||(1953836-1954015)
chr5 (7-112)||(1954583-1954688)
chr5 (454-650)||(35247470-35247669)
chr5 (295-442)||(28076673-28076818)
chr5 (387-477)||(32537781-32537872)
chr5 (291-357)||(25640390-25640456)
chr5 (595-648)||(15195762-15195815)
chr5 (599-648)||(32538039-32538088)
chr5 (341-442)||(12658528-12658628)
chr5 (595-652)||(32653623-32653680)
chr5 (593-642)||(28076958-28077007)
[»] chr3 (7 HSPs)
chr3 (167-698)||(4857983-4858513)
chr3 (496-698)||(23779913-23780116)
chr3 (167-479)||(23780171-23780492)
chr3 (692-795)||(4858538-4858641)
chr3 (391-442)||(51925895-51925946)
chr3 (598-640)||(5999913-5999955)
chr3 (598-643)||(51926092-51926137)
[»] chr4 (11 HSPs)
chr4 (496-698)||(53591744-53591946)
chr4 (262-483)||(53591458-53591681)
chr4 (296-435)||(9734182-9734320)
chr4 (692-778)||(53591973-53592059)
chr4 (288-418)||(21309475-21309605)
chr4 (341-477)||(12582928-12583065)
chr4 (593-642)||(9733988-9734037)
chr4 (598-646)||(12583233-12583281)
chr4 (598-650)||(45892681-45892733)
chr4 (598-650)||(48665921-48665973)
chr4 (604-650)||(21801431-21801477)
[»] chr1 (8 HSPs)
chr1 (167-415)||(10550742-10550983)
chr1 (496-692)||(27308878-27309072)
chr1 (295-435)||(27292237-27292376)
chr1 (285-479)||(27308623-27308811)
chr1 (692-787)||(27309106-27309199)
chr1 (465-638)||(25078605-25078781)
chr1 (359-435)||(45110876-45110951)
chr1 (598-653)||(24886439-24886494)
[»] chr8 (7 HSPs)
chr8 (179-357)||(11151820-11152009)
chr8 (288-435)||(10260986-10261133)
chr8 (295-390)||(27997287-27997382)
chr8 (295-390)||(28054589-28054684)
chr8 (215-251)||(2155908-2155944)
chr8 (290-354)||(2155992-2156056)
chr8 (597-642)||(10261336-10261381)
[»] scaffold0002 (1 HSPs)
scaffold0002 (467-651)||(346896-347083)
[»] chr2 (10 HSPs)
chr2 (598-685)||(13135740-13135827)
chr2 (304-400)||(40412483-40412579)
chr2 (366-435)||(26062868-26062937)
chr2 (366-435)||(26068607-26068676)
chr2 (288-475)||(31267127-31267315)
chr2 (593-642)||(29829773-29829822)
chr2 (550-654)||(42236651-42236756)
chr2 (598-653)||(20262962-20263017)
chr2 (605-648)||(31266907-31266950)
chr2 (28-57)||(24731536-24731565)
[»] chr6 (1 HSPs)
chr6 (598-650)||(23661391-23661443)
[»] chr7 (5 HSPs)
chr7 (454-654)||(32864542-32864745)
chr7 (309-476)||(12120212-12120384)
chr7 (598-650)||(12119998-12120050)
chr7 (601-646)||(26470348-26470393)
chr7 (601-646)||(26546788-26546833)
[»] scaffold0527 (2 HSPs)
scaffold0527 (598-650)||(3321-3373)
scaffold0527 (598-650)||(11384-11436)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 215 - 697
Target Start/End: Complemental strand, 1954522 - 1954040
Alignment:
Q  215 ggggcaatgacttgaccagtaaaccacaaaatcaaaatacaacaatttcagtacaaagtggtaaacaacgaacaacaaccctaaacaatcactgccacag 314  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1954522 ggggcaatgacttgaccagtaaaccacaaaatcaaaatacagcaatttcagtaaaaagtggtatacaacgaacaacaaccctaaacaatcactgccacag 1954423  T
Q  315 acaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaac 414  Q
    |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1954422 acaattcagcgaatccacgtatgaacgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaac 1954323  T
Q  415 acataaacgacccaagatccagcagctcacatcaaatatcagcaagcaataaacgccctttcgggccaaccaatccaatcg--gttcagatcgagggatg 512  Q
    ||| ||||||||||||||||||  |||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |||  ||| |||||||||||||    
T  1954322 acaaaaacgacccaagatccag--gctcccatcaaatatcagcaagcaataaatgccttttcgggccaaccaatccagtcgtagtttagatcgagggatg 1954225  T
Q  513 aacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcctgaaggtacgacatcaacaactaccgtcaacacg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||     
T  1954224 aacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcatgaaggtacggcatcaacaactaccgtcaacaca 1954125  T
Q  613 gagcgcctacgcacctagccctttcgagcaacatcaggcgaaacaaatcttgttgaatgcagatcgagggatggtatccaaccaa 697  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  1954124 gagcgtctacgcacctagccctttcgagcaacattaggagaaacaagtcttgttgaatgcagatcgagggatggtatccaaccaa 1954040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 692 - 871
Target Start/End: Complemental strand, 1954015 - 1953836
Alignment:
Q  692 aaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagagaggcagaacaagaccaccactaatcttcatcttcccaagacaacata 791  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||    
T  1954015 aaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagatagcctgaacaagaccaccactaatcttcatcttcccaaaacaacata 1953916  T
Q  792 aaacgaaaataaaagcaaacaaaccgttggataacaaaaagagaagacacccgccagcgaaactacaacaacaagtaaca 871  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1953915 aaacgaaaataaaagcaaacaaaccgttggataacaaaaagagaagacacccgccagcgaaactgcaacaacaagtaaca 1953836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 1954688 - 1954583
Alignment:
Q  7 aaagcagatataaagggacactccagcgttcttatttgattggtaagattacgcaatttgtaagtttaagtaacattttcgttttaatcaaagaaaaaga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |    
T  1954688 aaagcagatataaagggacactccagcgttcttatttgattggtaagattgtgcaatttgtaagtttacgtaacattttcgttttaatcaaagaaaaaaa 1954589  T
Q  107 agtaac 112  Q
    ||||||    
T  1954588 agtaac 1954583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 454 - 650
Target Start/End: Complemental strand, 35247669 - 35247470
Alignment:
Q  454 cagcaagcaataaacgccctttcgggcc-aaccaatccaatcg--gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacg 550  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||  || |||||||||||||||||||||||  ||| |  ||  |||||||| |  || |    
T  35247669 cagcaagtcatacacgccctttcgggccgaaccaatccaatcgttgtccagatcgagggatgaacaaacgaaggaactccaacacagtccaccgcaga-g 35247571  T
Q  551 cataaagcaaccgtagcagataaattcctgaaggtacgac-atcaacaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcag 649  Q
    ||| ||||||||| |||||||| | | || |||||||||| | | ||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||    
T  35247570 catgaagcaaccgcagcagatatagttcttaaggtacgacgaacgacaactaccgtcaacacggagcatctacgcacctagctctttcgagcaacctcag 35247471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 295 - 442
Target Start/End: Original strand, 28076673 - 28076818
Alignment:
Q  295 ctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaatagg 394  Q
    ||||||||||||| |||| |||||| |||||||||||||| |  |  |||||||||||||||| |||| |||||||||  |||| |||||| | || |||    
T  28076673 ctaaacaatcactaccacggacaatccaacgaacccacgtgtaggaacgaaaccgaattgcaa-aaaacgtagagtgaacattccgagctttttaaaagg 28076771  T
Q  395 cgtatggatcgactgccaacacataaacgacccaagatccagcagctc 442  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||||||    
T  28076772 cgtatggatcgactgccaacaca-gaacgacccaagttccaacagctc 28076818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 477
Target Start/End: Original strand, 32537781 - 32537872
Alignment:
Q  387 taaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagctcacatcaaa-tatcagcaagcaataaacgccctttcg 477  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| | || || ||| | ||||| ||||| ||||| |||||||||||||||    
T  32537781 taaataggcgtatggatcgtctgccaacacataaacgaccgaagtttcaacatctcccttcaaagtatcaacaagccataaacgccctttcg 32537872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 25640390 - 25640456
Alignment:
Q  291 aaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaa 357  Q
    ||||||||||||||||| |||| |||||| || ||||||||||| || |||||||||||||||||||    
T  25640390 aaccctaaacaatcactaccacggacaatccagcgaacccacgtgtgggcgcgaaaccgaattgcaa 25640456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 595 - 648
Target Start/End: Complemental strand, 15195815 - 15195762
Alignment:
Q  595 acaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatca 648  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  15195815 acaactaccgtcaacatggagcccctacgcacctagccttttcgagaaacatca 15195762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 599 - 648
Target Start/End: Original strand, 32538039 - 32538088
Alignment:
Q  599 ctaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatca 648  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  32538039 ctaccgtcaacacggagcatctatgcacctagccctttcgagcaacatca 32538088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 12658628 - 12658528
Alignment:
Q  341 gcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagc 440  Q
    ||||||||||||||||| |||||| ||||||  | |||| ||  |  || ||| ||||||||||  |||||||||||||||||| ||||| |||||||||    
T  12658628 gcgaaaccgaattgcaa-aaaatgcagagtggttgttcatagtattaaagtagacgtatggatcatctgccaacacataaacgatccaaggtccagcagc 12658530  T
Q  441 tc 442  Q
    ||    
T  12658529 tc 12658528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 652
Target Start/End: Original strand, 32653623 - 32653680
Alignment:
Q  595 acaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcg 652  Q
    |||||| |||||||||||||| | |||||||||||||| |||| ||||||||| ||||    
T  32653623 acaactgccgtcaacacggagtgtctacgcacctagccatttcaagcaacatctggcg 32653680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 642
Target Start/End: Original strand, 28076958 - 28077007
Alignment:
Q  593 caacaactaccgtcaacacggagcgcctacgcacctagccctttcgagca 642  Q
    ||||| |||||||||||||||| || ||||| ||||| ||||||||||||    
T  28076958 caacagctaccgtcaacacggaccgtctacgtacctaaccctttcgagca 28077007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 167 - 698
Target Start/End: Original strand, 4857983 - 4858513
Alignment:
Q  167 agacaaaagaggaattaaattaagatagaaaaggaagtacaagacctaggggcaatgacttgaccagtaaaccacaaaatcaaaatacaacaatttcagt 266  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4857983 agacaaaagaggaattaaattaaaatagaaaaggaggtataagat-tgggggcaatgacctgaccagtaaaccacaaaatcaaaatacaacaatttcagt 4858081  T
Q  267 acaaagtggtaaacaacgaacaacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaat-gt 365  Q
    ||||||||||| |||||||||| |||||||||||||||||| | || ||||||||| ||||||||||||||||||| |||||||||||||| ||||  ||    
T  4858082 acaaagtggtatacaacgaaca-caaccctaaacaatcactactacggacaattcagcgaacccacgtatgagcgccaaaccgaattgcaaaaaaaacgt 4858180  T
Q  366 agagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagctcacatcaaatatcagcaagcaata 465  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||    
T  4858181 agagtgagtattcagaacttctaaataggcgtatggatcgactgccaacacaaaaacgatccaagatcaagcagctcccatcaaatatcagcaagcaata 4858280  T
Q  466 aacgccctttcgggccaaccaatccaatcg--gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccg 563  Q
    ||||||||||||||||||||| |||| |||  |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  4858281 aacgccctttcgggccaaccattccagtcgtagttcagttcgagggatgaacaaacgacataaatgtaaagcagtccactgacaacgcataaagcaaccg 4858380  T
Q  564 tagcagataaattcctgaaggtacgacatcaacaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcgaaacaaatctt 663  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| | ||||| |||||||| ||||||||||| || | |||||||||||||| ||||    
T  4858381 tagcagataaagtcctgcaggtacgacatcaacaactatcgtcaac-cagagcgtctacgcacttagccctttcgtgc-atatcaggcgaaacaagtctt 4858478  T
Q  664 gttgaatgcagatcgagggatggtatccaaccaaa 698  Q
    ||||||| |||||||||||||||||||||||||||    
T  4858479 gttgaatccagatcgagggatggtatccaaccaaa 4858513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 496 - 698
Target Start/End: Complemental strand, 23780116 - 23779913
Alignment:
Q  496 gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcctgaaggtacgacatcaa 595  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  23780116 gttcagatcgagggatgaacaaacgacatgaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaagtcatgaaggtacgacatcaa 23780017  T
Q  596 caactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcgaaacaaatcttgttgaat-gcagatcgagggatggtatccaac 694  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||| |||    
T  23780016 caactaccgtcaacacggagcgtctacgcacctaaccctttcgagcaacatcaggcgaaacaagtcttgttgaatcttagatcgagggatggtatctaac 23779917  T
Q  695 caaa 698  Q
    ||||    
T  23779916 caaa 23779913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 167 - 479
Target Start/End: Complemental strand, 23780492 - 23780171
Alignment:
Q  167 agacaaaagaggaattaaattaagatagaaaaggaagtacaagacctaggggcaatgacttgaccagtaaaccacaaaatcaaa-------------ata 253  Q
    |||||||| || ||||||||||| |||||||||||||||||||| || | |||| |||| |||||||||||||||| || ||||             |||    
T  23780492 agacaaaatagaaattaaattaaaatagaaaaggaagtacaaga-ctggaggcattgacctgaccagtaaaccacataaacaaaatcccaacgggtgata 23780394  T
Q  254 caacaatttcagtacaaagtggtaaacaacgaacaacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaatt 353  Q
    ||||||  | ||||||||||||||   |||    |||||| |||||||||||||||||| |||||| || ||||  || | |||||| ||||||||||||    
T  23780393 caacaa-ataagtacaaagtggtattaaac---aaacaactctaaacaatcactgccacggacaatccagcgaattcatgcatgagcacgaaaccgaatt 23780298  T
Q  354 gcaaga--aaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagctcacatcaaat 451  Q
    |||| |  ||| |||||||||||||||||||||||||||| |||||| | |||| || |||||||| ||||||| |||| | ||||||| | |||||||     
T  23780297 gcaaaaagaaacgtagagtgagtattcagagcttctaaattggcgtaagaatcgtctcccaacacagaaacgactcaagtttcagcagc-cccatcaaaa 23780199  T
Q  452 atcagcaagcaataaacgccctttcggg 479  Q
    ||||||||||||||||||||||||||||    
T  23780198 atcagcaagcaataaacgccctttcggg 23780171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 692 - 795
Target Start/End: Original strand, 4858538 - 4858641
Alignment:
Q  692 aaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagagaggcagaacaagaccaccactaatcttcatcttcccaagacaacata 791  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||||| || || ||||| ||||||||||| ||||||||||||||| | ||||||||    
T  4858538 aaccaaatcttaaatccagacaaaccaaattcaaaatttcaactaaaccggatagccagaataagaccaccaccaatcttcatcttcccgaaacaacata 4858637  T
Q  792 aaac 795  Q
    ||||    
T  4858638 aaac 4858641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 51925895 - 51925946
Alignment:
Q  391 taggcgtatggatcgactgccaacacataaacgacccaagatccagcagctc 442  Q
    |||||||||| |||| |||||||||||||||||||||||| |||| ||||||    
T  51925895 taggcgtatgaatcgtctgccaacacataaacgacccaaggtccaacagctc 51925946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 640
Target Start/End: Original strand, 5999913 - 5999955
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgag 640  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  5999913 actaccgtcaacacagagcatctacgcacctagccctttcgag 5999955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 643
Target Start/End: Original strand, 51926092 - 51926137
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaa 643  Q
    |||||||||||||||||||| | ||||||||| | |||||||||||    
T  51926092 actaccgtcaacacggagcgacgacgcacctaactctttcgagcaa 51926137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 5e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 496 - 698
Target Start/End: Original strand, 53591744 - 53591946
Alignment:
Q  496 gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcctgaaggtacgacatcaa 595  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  53591744 gttcagatcgagggacgaacaaacgacatgaatgtaaagcagtccattgacgacacataaagcaaccgtagtagataaagtcctgaaggtacgacatcaa 53591843  T
Q  596 caactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcgaaacaaatcttgttgaatgcagatcgagggatggtatccaacc 695  Q
     ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  53591844 taactatcgtcaacacggagcgtctacgcacctagccctttcgagcaacatcaggcgaaacaagtctcgttgaatccagatcgagtgatggtatccaacc 53591943  T
Q  696 aaa 698  Q
    |||    
T  53591944 aaa 53591946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 262 - 483
Target Start/End: Original strand, 53591458 - 53591681
Alignment:
Q  262 tcagtacaaagtggtaaacaacgaacaacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaa- 360  Q
    ||||||||||||||||   ||| ||||||||| |||||| ||||||||||||||||||  | |||||||||||||||||| |||| |||||||||| ||     
T  53591458 tcagtacaaagtggtattaaacaaacaacaactctaaacgatcactgccacagacaatctatcgaacccacgtatgagcgtgaaatcgaattgcaaaaag 53591557  T
Q  361 -aatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagctcacatcaaatatcagcaa 459  Q
     || |||||||||||||||| ||||||||||| ||| |||| |||| || |||||||| ||||||||| || ||||||||||| ||||||| ||||||||    
T  53591558 aaacgtagagtgagtattcaaagcttctaaattggcttatgaatcgtctaccaacacagaaacgacccgagttccagcagctcccatcaaaaatcagcaa 53591657  T
Q  460 gcaataaacgccctttcgggccaa 483  Q
    ||||||||||||||||||||||||    
T  53591658 gcaataaacgccctttcgggccaa 53591681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 296 - 435
Target Start/End: Complemental strand, 9734320 - 9734182
Alignment:
Q  296 taaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggc 395  Q
    |||||||||||| |||| ||||||  | ||||||||||| || || |||||||||||||||| |||| |||||||||| ||||| ||||| |||| ||||    
T  9734320 taaacaatcactaccacggacaatctagcgaacccacgtgtgggcacgaaaccgaattgcaaaaaaacgtagagtgagcattcaaagcttataaa-aggc 9734222  T
Q  396 gtatggatcgactgccaacacataaacgacccaagatcca 435  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9734221 gtatggatcgactgccaacacagaaacgacccaagatcca 9734182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 778
Target Start/End: Original strand, 53591973 - 53592059
Alignment:
Q  692 aaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagagaggcagaacaagaccaccactaatcttcatcttc 778  Q
    |||||||||||||||||| |||||||| |||||||| || ||| ||||||||||| | |||||| |||||| | |||||||||||||    
T  53591973 aaccaaatcttaaatccgaacaaaccatattcaaaaattcaaccaaaccagagagtcggaacaaaaccaccgccaatcttcatcttc 53592059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 288 - 418
Target Start/End: Complemental strand, 21309605 - 21309475
Alignment:
Q  288 aacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttct 387  Q
    |||||||||||||||| |||  ||  ||||||  |  |||||||||| ||| ||||||||||||||| || |||| | |||||||| ||||||||||| |    
T  21309605 aacaaccctaaacaattactatcatggacaatcgagagaacccacgtttgaacgcgaaaccgaattgtaaaaaaacgcagagtgagcattcagagctttt 21309506  T
Q  388 aaataggcgtatggatcgactgccaacacat 418  Q
     | ||| |||||| |||| ||||||||||||    
T  21309505 gagtagacgtatgaatcgtctgccaacacat 21309475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 477
Target Start/End: Original strand, 12582928 - 12583065
Alignment:
Q  341 gcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagc 440  Q
    ||||||| || |||||| |||||| | | ||| ||||| |||| | ||||||||||||||||||| ||||||||||| |||| ||||||| | || ||||    
T  12582928 gcgaaactgagttgcaaaaaaatgcataatgaatattctgagcatttaaataggcgtatggatcgtctgccaacacagaaacaacccaagttgcaacagc 12583027  T
Q  441 tcacatcaaa-tatcagcaagcaataaacgccctttcg 477  Q
    |  | ||||| |||||||| || ||||| |||||||||    
T  12583028 tatcttcaaagtatcagcaggccataaatgccctttcg 12583065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 642
Target Start/End: Complemental strand, 9734037 - 9733988
Alignment:
Q  593 caacaactaccgtcaacacggagcgcctacgcacctagccctttcgagca 642  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  9734037 caacagctaccgtcaacacggagcgtctacgcacctaaccctttcgagca 9733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 646
Target Start/End: Original strand, 12583233 - 12583281
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacat 646  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||    
T  12583233 actaccgtcaacacggagcatctacacacctagccctttcgagcaacat 12583281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 650
Target Start/End: Original strand, 45892681 - 45892733
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    |||||||||||||||||||  ||| |||||||||||||| |||||||||||||    
T  45892681 actaccgtcaacacggagcatctaggcacctagcccttttgagcaacatcagg 45892733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 650
Target Start/End: Complemental strand, 48665973 - 48665921
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    |||||||||||||||||||  ||||||||||||| |||| |||||||||||||    
T  48665973 actaccgtcaacacggagcatctacgcacctagctcttttgagcaacatcagg 48665921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 604 - 650
Target Start/End: Complemental strand, 21801477 - 21801431
Alignment:
Q  604 gtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    |||||||||||||  ||||||||||||| | ||||||||||||||||    
T  21801477 gtcaacacggagcatctacgcacctagctcattcgagcaacatcagg 21801431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 2e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 167 - 415
Target Start/End: Complemental strand, 10550983 - 10550742
Alignment:
Q  167 agacaaaagaggaattaaattaagatagaaaaggaagtacaagacctaggggcaatgacttgaccagtaaaccacaaaatcaaaatacaacaatttcagt 266  Q
    |||||||| || ||||||||||| ||||||||||||||| ||||| | |||||||||    |||||||||||||||||||||||||||||||||||||||    
T  10550983 agacaaaatagaaattaaattaaaatagaaaaggaagtataagac-tgggggcaatggtccgaccagtaaaccacaaaatcaaaatacaacaatttcagt 10550885  T
Q  267 acaaagtggtaaacaacgaacaacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgta 366  Q
    ||||||||||| |||||||||||||||| |||||||||| || ||| |||||| || | ||||||||||||||| |||||||||||||||| |||| ||     
T  10550884 acaaagtggtatacaacgaacaacaaccttaaacaatcattgtcacggacaatccagcaaacccacgtatgagcacgaaaccgaattgcaaaaaaacgt- 10550786  T
Q  367 gagtgagtattcagagcttctaaataggcgtatggatcgactgccaaca 415  Q
         | |||||||||||| |||||||| ||||||||||||||||||||    
T  10550785 -----aatattcagagcttttaaataggtgtatggatcgactgccaaca 10550742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 496 - 692
Target Start/End: Original strand, 27308878 - 27309072
Alignment:
Q  496 gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcctgaaggtacgacatcaa 595  Q
    |||||||||||||||||||| ||||||| ||    ||  |||||||||   || |||||||||||| | |||| ||||| | |||| |||||||| ||||    
T  27308878 gttcagatcgagggatgaaccaacgacataacg--aacacagtccactattgaggcataaagcaactgcagcatataaagttctgagggtacgacttcaa 27308975  T
Q  596 caactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcgaaacaaatcttgttgaatgcagatcgagggatggtatcca 692  Q
    |||| | ||||||||||||||| | ||||||||| | |||||||| |||||||  ||||| || ||||||||||| |||||||||||||||||||||    
T  27308976 caaccatcgtcaacacggagcgtcgacgcacctaactctttcgagtaacatcacccgaaaaaagtcttgttgaatccagatcgagggatggtatcca 27309072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 295 - 435
Target Start/End: Original strand, 27292237 - 27292376
Alignment:
Q  295 ctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaatagg 394  Q
    ||||||||||||| |||| |||||  || | ||||||||| || || |||||||||||||||| |||| |||||||||| ||||| ||||| |||| ||     
T  27292237 ctaaacaatcactaccacggacaaaccagcaaacccacgtgtgggcacgaaaccgaattgcaaaaaaacgtagagtgagcattcaaagcttataaa-aga 27292335  T
Q  395 cgtatggatcgactgccaacacataaacgacccaagatcca 435  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  27292336 cgtatggatcgactgccaacacagaaacgacccaagatcca 27292376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 479
Target Start/End: Original strand, 27308623 - 27308811
Alignment:
Q  285 aacaacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagct 384  Q
    ||||||||| ||||||||||||| ||||  ||||| ||  |||||||| |||||||| ||||| ||||||||| ||||       || ||||||| |||     
T  27308623 aacaacaactctaaacaatcactaccacgaacaatccagtgaacccacatatgagcgtgaaacggaattgcaaaaaaac------tgtgtattcaaagca 27308716  T
Q  385 tctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagctcacatcaaatatcagcaagcaataaacgccctttcggg 479  Q
    || || |||||||||| |||| ||||||||||| |||||||||||| ||||||||||| ||||||| || |  ||| ||||||| ||||||||||    
T  27308717 tcaaagtaggcgtatgaatcgtctgccaacacacaaacgacccaagttccagcagctcccatcaaaaataaaaaagtaataaacaccctttcggg 27308811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 787
Target Start/End: Original strand, 27309106 - 27309199
Alignment:
Q  692 aaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagagaggcagaacaagaccaccactaatcttcatcttcccaagacaa 787  Q
    ||||||||  || ||||| |||||||| ||||||||||| |||||||||  |||| ||| |||| |||||||| ||||||||||||| ||| ||||    
T  27309106 aaccaaattgtatatccgaacaaaccaaattcaaaatttcaactaaacc--agagtcaggacaaaaccaccacaaatcttcatcttctcaaaacaa 27309199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 638
Target Start/End: Original strand, 25078605 - 25078781
Alignment:
Q  465 aaacgccctttcgggcc-aaccaatccaatcg--gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaac 561  Q
    ||||||||||||||||| ||||||||| | ||  |||||||| |||||||||||||||||| |||        |||||||| |||||||||  |||| ||    
T  25078605 aaacgccctttcgggccgaaccaatccgaacgttgttcagattgagggatgaacaaacgacggaaca------cagtccaccgacgacgcacgaagccac 25078698  T
Q  562 cgtagcagata------aattcctgaaggtacgacat-caacaactaccgtcaacacggagcgcctacgcacctagccctttcg 638  Q
    || ||||||||      ||||||| |||| ||||||  | ||||||||||||||||||||||  ||||||||||| ||||||||    
T  25078699 cgcagcagatacaatacaattcct-aaggaacgacaaacgacaactaccgtcaacacggagcttctacgcacctaaccctttcg 25078781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 45110876 - 45110951
Alignment:
Q  359 aaaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatcca 435  Q
    |||| |||||||||| ||||||||||||| || |||| ||||||| ||||||||||| | ||| |||||||| ||||    
T  45110876 aaaaagtagagtgagcattcagagcttctgaa-aggcatatggattgactgccaacatagaaatgacccaagttcca 45110951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 653
Target Start/End: Complemental strand, 24886494 - 24886439
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcga 653  Q
    ||||||| |||||||||||| ||||||||| | | ||||||||||||||| |||||    
T  24886494 actaccgccaacacggagcgactacgcaccaaactctttcgagcaacatctggcga 24886439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 179 - 357
Target Start/End: Original strand, 11151820 - 11152009
Alignment:
Q  179 aattaaattaagatagaaaa-ggaagtacaagacctaggggcaatgacttgaccagtaaaccacaaaatcaaaa------------tacaacaatttcag 265  Q
    ||||| ||||| |||||||| ||||||||||||| | ||||||||||| | |||||||||||||||||||||||            ||||||||| |  |    
T  11151820 aattatattaaaatagaaaaaggaagtacaagac-tgggggcaatgaccttaccagtaaaccacaaaatcaaaacccaacgggtgatacaacaatatg-g 11151917  T
Q  266 tacaaagtggtaaacaacgaacaacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaa 357  Q
    ||||||||||||||  || ||||||||| | |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  11151918 tacaaagtggtaaaatacaaacaacaactccaaacaatcactgccacggacaatccagcgaacccacgtatgagcgcgaaaccgaattgcaa 11152009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 10260986 - 10261133
Alignment:
Q  288 aacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgc-aagaaaatgtagagtgagtattcagagcttc 386  Q
    |||||||||||||||||||| ||||||| ||| || |||||  ||||||||||| ||||||||||||| || |||| |||||||||  |||||||| |      
T  10260986 aacaaccctaaacaatcactaccacagataatccagcgaacatacgtatgagcgtgaaaccgaattgcaaaaaaaacgtagagtgatcattcagag-tat 10261084  T
Q  387 taaataggcgtatggatcgactgccaacacataaacgacccaagatcca 435  Q
    | | ||||||||| ||||| ||||||||||| |||||| ||||| ||||    
T  10261085 tgagtaggcgtattgatcgtctgccaacacagaaacgatccaagttcca 10261133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 27997382 - 27997287
Alignment:
Q  295 ctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaa 390  Q
    ||||||||||||| |||| | |||||||  ||| |||||| || |   ||||||||||| ||| |||| |||||||||| ||||||||||||||||    
T  27997382 ctaaacaatcactaccacgggcaattcagtgaatccacgtgtgggattgaaaccgaattacaaaaaaacgtagagtgagcattcagagcttctaaa 27997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 28054684 - 28054589
Alignment:
Q  295 ctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaa 390  Q
    ||||||||||||| |||| | |||||||  ||| |||||| || |   ||||||||||| ||| |||| |||||||||| ||||||||||||||||    
T  28054684 ctaaacaatcactaccacgggcaattcagtgaatccacgtgtgggattgaaaccgaattacaaaaaaacgtagagtgagcattcagagcttctaaa 28054589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 2155908 - 2155944
Alignment:
Q  215 ggggcaatgacttgaccagtaaaccacaaaatcaaaa 251  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2155908 ggggcaatgacctgaccagtaaaccacaaaatcaaaa 2155944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 2155992 - 2156056
Alignment:
Q  290 caaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattg 354  Q
    |||| |||||| |||||| ||||||| ||| |||||||||||||| ||||  |||||||||||||    
T  2155992 caacgctaaaccatcactaccacagataatccaacgaacccacgtgtgagtacgaaaccgaattg 2156056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 642
Target Start/End: Original strand, 10261336 - 10261381
Alignment:
Q  597 aactaccgtcaacacggagcgcctacgcacctagccctttcgagca 642  Q
    |||||||||||| |||||||  ||||||||||||||||||| ||||    
T  10261336 aactaccgtcaatacggagcttctacgcacctagccctttcaagca 10261381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 651
Target Start/End: Original strand, 346896 - 347083
Alignment:
Q  467 acgccctttcgggcc-aaccaatccaatcg--gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccg 563  Q
    ||||||||||||||| ||||||||||||||  || ||||| |||||||||||||||||  ||| |  || ||||||||| |  || |||| |||||||||    
T  346896 acgccctttcgggccgaaccaatccaatcgttgtccagattgagggatgaacaaacgaaggaactccaacgcagtccaccgcaga-gcatgaagcaaccg 346994  T
Q  564 tagcagataaattcctgaaggtacgac-atcaacaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggc 651  Q
     |||||||| | | || |||||| ||| | | ||||||||||||||||| ||||  ||||||||||||| |||||||||||| ||||||    
T  346995 cagcagatacagttcttaaggtatgacgaacgacaactaccgtcaacacagagcatctacgcacctagctctttcgagcaacctcaggc 347083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 598 - 685
Target Start/End: Original strand, 13135740 - 13135827
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcgaaacaaatcttgttgaatgcagatcgagggatg 685  Q
    |||||||||||||||||||  |||||||| |||| ||||||| ||||||| ||| |||||| ||||||||||| ||||||| ||||||    
T  13135740 actaccgtcaacacggagcttctacgcacatagctctttcgaacaacatccggcaaaacaagtcttgttgaatccagatcgtgggatg 13135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 40412483 - 40412579
Alignment:
Q  304 cactgccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggcgtatg 400  Q
    |||| |||| ||||||||| ||||| ||||||||||||||||||| |||||||| |||| | |||||||||  ||||||| || ||  |||||||||    
T  40412483 cactaccactgacaattcagcgaactcacgtatgagcgcgaaaccaaattgcaaaaaaacgcagagtgagtgatcagagcatcaaagaaggcgtatg 40412579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 26062868 - 26062937
Alignment:
Q  366 agagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatcca 435  Q
    |||||||| ||||||||| |||| ||| ||||||| |||| |||||||||||||||||| ||||| ||||    
T  26062868 agagtgagcattcagagcatctacataagcgtatgaatcgtctgccaacacataaacgatccaagttcca 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 26068607 - 26068676
Alignment:
Q  366 agagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacataaacgacccaagatcca 435  Q
    |||||||| ||||||||| |||| ||| ||||||| |||| |||||||||||||||||| ||||| ||||    
T  26068607 agagtgagcattcagagcatctacataagcgtatgaatcgtctgccaacacataaacgatccaagttcca 26068676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 288 - 475
Target Start/End: Complemental strand, 31267315 - 31267127
Alignment:
Q  288 aacaaccctaaacaatcactgccacagacaattcaacgaacccacgtatgagc--gcgaaaccgaattgcaagaaaatgtagagtgagtattcagagctt 385  Q
    ||||||||||||||| |||| ||||||||||| ||||||||| ||||| |||   |||||| | ||||||||| ||| | || |||| | |||  | | |    
T  31267315 aacaaccctaaacaaccactaccacagacaatccaacgaaccaacgta-gaggatgcgaaaac-aattgcaagtaaacgcagtgtgaattttctaatcat 31267218  T
Q  386 ctaaataggcgtatggatcgactgccaacacataaacgacccaagatccagcagctcacatcaaa-tatcagcaagcaataaacgcccttt 475  Q
     | |||||| |||||||||| ||||||||||| ||||||||   | |||| || ||| | ||||| ||||||||||| |||||||||||||    
T  31267217 ttgaataggtgtatggatcgtctgccaacacagaaacgacctccgttccaacatctcccttcaaagtatcagcaagccataaacgcccttt 31267127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 642
Target Start/End: Complemental strand, 29829822 - 29829773
Alignment:
Q  593 caacaactaccgtcaacacggagcgcctacgcacctagccctttcgagca 642  Q
    |||||||||||||||||| |||||| ||||||||| | ||||||||||||    
T  29829822 caacaactaccgtcaacatggagcgtctacgcaccaaaccctttcgagca 29829773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 654
Target Start/End: Original strand, 42236651 - 42236756
Alignment:
Q  550 gcataaagcaaccgtagcagataaattcctgaaggtacgac-atcaacaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatca 648  Q
    |||| ||||||||| | |||||| | | || |||||||||| | | || ||||||||||||| |||||  ||||||||||||| |||||||| ||| |||    
T  42236651 gcatgaagcaaccgcatcagatacaattcttaaggtacgacgaacgacgactaccgtcaacatggagcatctacgcacctagctctttcgagtaacctca 42236750  T
Q  649 ggcgaa 654  Q
    ||||||    
T  42236751 ggcgaa 42236756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 653
Target Start/End: Original strand, 20262962 - 20263017
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcaggcga 653  Q
    ||||||| |||||||||||| ||||||||| | | ||||||||||||||| |||||    
T  20262962 actaccgccaacacggagcgactacgcaccaaactctttcgagcaacatctggcga 20263017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 648
Target Start/End: Complemental strand, 31266950 - 31266907
Alignment:
Q  605 tcaacacggagcgcctacgcacctagccctttcgagcaacatca 648  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||    
T  31266950 tcaacacggagcatctacgcacctagccctttcgaacaacatca 31266907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 24731565 - 24731536
Alignment:
Q  28 tccagcgttcttatttgattggtaagatta 57  Q
    ||||||||||||||||||||||||||||||    
T  24731565 tccagcgttcttatttgattggtaagatta 24731536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 598 - 650
Target Start/End: Complemental strand, 23661443 - 23661391
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  23661443 actaccgtcaacacggagcatctacgcacctagccctttcgagcaacatcagg 23661391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 654
Target Start/End: Original strand, 32864542 - 32864745
Alignment:
Q  454 cagcaagcaataaacgccctttcgggcc-aaccaatccaatcg--gttcagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacg 550  Q
    |||||||  ||| |||||||| |||||| |||||||||||||   || |||||||||||||||||||||||  ||| |  ||  ||||||||  || | |    
T  32864542 cagcaagtcatacacgcccttccgggccgaaccaatccaatcattgtccagatcgagggatgaacaaacgaaggaactccaacacagtccacc-acaaag 32864640  T
Q  551 cataaagcaaccgtagcagataaattcctgaaggtacgacat-caacaactaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcag 649  Q
    ||| ||| ||||| |||||||| | | || |||||||||||  | ||||| ||||||||||||||||  |||  |||||||| |||||||||||| ||||    
T  32864641 catgaagaaaccgcagcagatacaattcttaaggtacgacaaacgacaaccaccgtcaacacggagcatctatacacctagctctttcgagcaacctcag 32864740  T
Q  650 gcgaa 654  Q
    |||||    
T  32864741 gcgaa 32864745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 476
Target Start/End: Complemental strand, 12120384 - 12120212
Alignment:
Q  309 ccacagacaattcaacgaacccacgtatgagcgcgaaaccgaattgca----agaaaatgtagagtgagtattcagagcttctaaataggcgtatggatc 404  Q
    ||||| ||||| |||||||||||| || | |||  |||||||||| ||    | |||||||||||||| ||||  |||| | ||| |||||||| |||||    
T  12120384 ccacaaacaatccaacgaacccacataggggcgtaaaaccgaattacaaaataaaaaatgtagagtgaatattttgagcatttaagtaggcgtacggatc 12120285  T
Q  405 gactgccaacacataaacgacccaagatccagcagctcacatcaaa-tatcagcaagcaataaacgccctttc 476  Q
    | ||  ||||||||||| |||||||| |||| || ||| | ||||| ||||||||||| ||||||||| ||||    
T  12120284 gtctaacaacacataaatgacccaagttccaacatctcgcttcaaagtatcagcaagccataaacgccttttc 12120212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 650
Target Start/End: Complemental strand, 12120050 - 12119998
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    |||||||||||||| || |  |||| |||||||||||||||||||||||||||    
T  12120050 actaccgtcaacacagaacatctacacacctagccctttcgagcaacatcagg 12119998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 646
Target Start/End: Complemental strand, 26470393 - 26470348
Alignment:
Q  601 accgtcaacacggagcgcctacgcacctagccctttcgagcaacat 646  Q
    |||||||||| |||||  |||||||||||||||||||||| |||||    
T  26470393 accgtcaacatggagcatctacgcacctagccctttcgaggaacat 26470348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 646
Target Start/End: Complemental strand, 26546833 - 26546788
Alignment:
Q  601 accgtcaacacggagcgcctacgcacctagccctttcgagcaacat 646  Q
    |||||||||| |||||  |||||||||||||||||||||| |||||    
T  26546833 accgtcaacatggagcatctacgcacctagccctttcgaggaacat 26546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 650
Target Start/End: Original strand, 3321 - 3373
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    ||||| |||| ||||||||  ||| ||||||||||||||||||||||||||||    
T  3321 actacagtcatcacggagcatctatgcacctagccctttcgagcaacatcagg 3373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 650
Target Start/End: Original strand, 11384 - 11436
Alignment:
Q  598 actaccgtcaacacggagcgcctacgcacctagccctttcgagcaacatcagg 650  Q
    ||||| |||| ||||||||  ||| ||||||||||||||||||||||||||||    
T  11384 actacagtcatcacggagcatctatgcacctagccctttcgagcaacatcagg 11436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 95 times since January 2019
Visitors: 3647