View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556-INSERTION-15 (Length: 395)
Name: NF0556-INSERTION-15
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-15 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 22836740 - 22836355
Alignment:
| Q |
8 |
catcaaacatctagagcacaaaatatacatacaactttcatggtattattttatttcttaaacaaccacattgcaccaatatattaatttaatccaagct |
107 |
Q |
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| T |
22836740 |
catcaaacatctagagcacaaaatatacatacaactttcatggtattattttatttcttaaacgaccacattgcactaatat-ttaatttaatccaagct |
22836642 |
T |
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| Q |
108 |
cacagtataaagaagattttaattgatcaacaaatacaaaacaaccatctatttcacaatnnnnnnnngtatcatttaattgattaacaactacccaaac |
207 |
Q |
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| T |
22836641 |
cacagtataaagaagattttaattgatcaacaaatacaaaacaaccatctatttcacaataaaaaaa-gtatcatttaattgattaacaactacccaaac |
22836543 |
T |
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| Q |
208 |
aaccatatattaattttaaaagaatttgaatgggtgttctttgttgtagtagggaggaaaattgtatggtttgtgtttgtgtgttgttttggtttctgta |
307 |
Q |
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| T |
22836542 |
aaccatatattaattttaaaagaatttgaatgggttttctttgttgtagtagggaggaaaattgtatggtttgtgtttgtgtgttgttttagtttctgta |
22836443 |
T |
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| Q |
308 |
tatgtcaacatcgaaacaactcgttatactatttattgatgaacaaaaattaattatcgttcttcctgaaaaacagttaaatattctt |
395 |
Q |
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| T |
22836442 |
tatgtcaacatcgaaacaactcgttatactatttattgatgaacaaaaattaattatcgttcttcctgaaaaacagttaaatactctt |
22836355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 22826318 - 22826097
Alignment:
| Q |
8 |
catcaaacatctagagcacaaaatatacatacaactttcatggtattattttatttcttaaacaaccacattgcaccaatatattaatttaatccaagct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||||| ||||| |
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| T |
22826318 |
catcaaacatctagagcacaaaatatacatacaactttcatggtattattttatttcttaaacgacaacattgcactaatat-ttaatttaatctaagct |
22826220 |
T |
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| Q |
108 |
cacagtataaagaagattttaattgatcaacaaatacaaaacaaccatctatttcacaatnnnnnnnngtatcatttaattgattaacaactacccaaac |
207 |
Q |
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| T |
22826219 |
cacagtaaaaagaagattttaattgatcaacaactacaaaacaaccatctatttcacaataaacaaac-tatcatttaattgattaacaactacccaaac |
22826121 |
T |
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| Q |
208 |
aaccatatattaattttaaaagaa |
231 |
Q |
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| T |
22826120 |
aaccatatattaattttaaaagaa |
22826097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 224 - 395
Target Start/End: Complemental strand, 22826076 - 22825905
Alignment:
| Q |
224 |
taaaagaatttgaatgggtgttctttgttgtagtagggaggaaaattgtatggtttgtgtttgtgtgttgttttggtttctgtatatgtcaacatcgaaa |
323 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22826076 |
taaaagaatttgaatgggtttgctttgttgtagtagggaggaaaattgtatggtttgtgtttgtgtgttgttttggtttctgtatatgtcaacatcgaaa |
22825977 |
T |
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| Q |
324 |
caactcgttatactatttattgatgaacaaaaattaattatcgttcttcctgaaaaacagttaaatattctt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
22825976 |
caactcgttatactatttattgatgaacaaaaattaattatcgttcttcctgaacaatggttaaatactctt |
22825905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 44566193 - 44566132
Alignment:
| Q |
9 |
atcaaacatctagagcacaaaatatacatacaactttcatggtattattttatttcttaaac |
70 |
Q |
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|||||||| ||||||||||||||||| ||||||| | ||| || |||||| | ||||||||| |
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| T |
44566193 |
atcaaacacctagagcacaaaatatagatacaacgtccattgtgttatttgacttcttaaac |
44566132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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