View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0556-INSERTION-16 (Length: 541)

Name: NF0556-INSERTION-16
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0556-INSERTION-16
NF0556-INSERTION-16
[»] chr3 (5 HSPs)
chr3 (8-444)||(48709894-48710330)
chr3 (246-440)||(48706557-48706756)
chr3 (462-541)||(48709790-48709868)
chr3 (154-198)||(48706759-48706803)
chr3 (27-90)||(1810011-1810074)
[»] chr6 (2 HSPs)
chr6 (42-90)||(733165-733213)
chr6 (26-85)||(9027617-9027676)
[»] chr1 (2 HSPs)
chr1 (27-86)||(24502801-24502860)
chr1 (46-94)||(34278685-34278733)
[»] chr7 (1 HSPs)
chr7 (57-90)||(4001743-4001776)
[»] chr8 (1 HSPs)
chr8 (42-86)||(25869254-25869298)
[»] chr4 (1 HSPs)
chr4 (46-94)||(46201378-46201426)


Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 48710330 - 48709894
Alignment:
Q  8 ataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctataggctttcgaaaatagtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48710330 ataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctataggcttacgaaaatagtt 48710231  T
Q  108 tatagcttatatnnnnnnncagtttgattttattttatcnnnnnnnattcaggcttaagctatcattaaatacatgccccactatatctctacagaacta 207  Q
    ||||||||||||       ||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710230 tatagcttatataaaaaaacagtttgattttattttttatttttttattcaggcttaagctatcattaaatacatgccccactatatctctacagaacta 48710131  T
Q  208 cacatttacatttcatttcagaaagaagaaaaaactagtacacatttacatttacacagagtgtaaatgtgatgtataaaaaatgagtttgagacaaaat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48710130 cacatttacatttcatttcagaaagaagaaaaaactagtacacatttacatttacacagagtgtaaatgtgatgtataaaaaatcagtttgagacaaaat 48710031  T
Q  308 taatgatccaggtatttcgagaaaccccctcaaacttagttactgatcgacatatataataaacaaaaaactacttgcgaaagtcttttgttacttgtgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48710030 taatgatccaggtatttcgagaaaccccctcaaacttagttaatgatcgacatatacaataaacaaaaaactacttgcgaaagtcttttgttacttgtgc 48709931  T
Q  408 attttcaaattaccaagtgtagatcaatcaatagaag 444  Q
    |||||||||||||||||||||||||||||||||||||    
T  48709930 attttcaaattaccaagtgtagatcaatcaatagaag 48709894  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 246 - 440
Target Start/End: Complemental strand, 48706756 - 48706557
Alignment:
Q  246 tacacatttacatttacacagagtgtaaatgtgatgta--taaaaaatgagtttgagacaaaattaatgatccag---gtatttcgagaaaccccctcaa 340  Q
    ||||||| || ||||||| |||| |||||||||| |||  ||||||| | |||||||||| ||||||||||||||   ||||||| | ||||||||||||    
T  48706756 tacacatctaaatttacaaagagggtaaatgtgacgtacataaaaaacgcgtttgagacagaattaatgatccagcaggtatttcaacaaaccccctcaa 48706657  T
Q  341 acttagttactgatcgacatatataataaacaaaaaactacttgcgaaagtcttttgttacttgtgcattttcaaattaccaagtgtagatcaatcaata 440  Q
    ||||||||| ||||| ||||||| |||||| | ||||||||||  |||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  48706656 acttagttaatgatcaacatatacaataaatagaaaactacttctgaaagtcttttgctacttgtgcattttcaaattacccggtgtagatcaatcaata 48706557  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 462 - 541
Target Start/End: Complemental strand, 48709868 - 48709790
Alignment:
Q  462 taatactagtactgaagatatacaaaggtatgcgctagtcaaggacgaaaacacgatacattatttccctaaattttact 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48709868 taatactagtactgaagatatacaaaggtatgcgctagtcaaggacgaaaacacgatacattattt-cctaaattttact 48709790  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 48706803 - 48706759
Alignment:
Q  154 attcaggcttaagctatcattaaatacatgccccactatatctct 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48706803 attcaggcttaagctatcattaaatacatgccccactatatctct 48706759  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 1810074 - 1810011
Alignment:
Q  27 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctata 90  Q
    ||||||| |||||||||||| ||||||| ||||||| ||  ||||||||| || ||||||||||    
T  1810074 tttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctata 1810011  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 733165 - 733213
Alignment:
Q  42 ggaaataacttattacatgtcaatatgttgttttcagcatatttctata 90  Q
    ||||||||||||| ||||||| | | |||||||||||||||||||||||    
T  733165 ggaaataacttatgacatgtccacaagttgttttcagcatatttctata 733213  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 9027676 - 9027617
Alignment:
Q  26 gtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatattt 85  Q
    |||||| | |||||| ||||||||||||| ||||||| ||| |||||||||||| |||||    
T  9027676 gtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattt 9027617  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 24502801 - 24502860
Alignment:
Q  27 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttc 86  Q
    ||||||| ||||||| |||| ||||||| |||||||||||  ||||||||||| ||||||    
T  24502801 tttgagagagcttacagaaacaacttatgacatgtcaataatttgttttcagcttatttc 24502860  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 34278685 - 34278733
Alignment:
Q  46 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 94  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  34278685 ataacttatgacatgttcataggttgttttcagcttatttctataggct 34278733  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 4001776 - 4001743
Alignment:
Q  57 catgtcaatatgttgttttcagcatatttctata 90  Q
    |||||||||| |||||||||||||||||||||||    
T  4001776 catgtcaataagttgttttcagcatatttctata 4001743  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 25869254 - 25869298
Alignment:
Q  42 ggaaataacttattacatgtcaatatgttgttttcagcatatttc 86  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  25869254 ggaaataacttatgacatgtccataagttgttttcagcttatttc 25869298  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 46201426 - 46201378
Alignment:
Q  46 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 94  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  46201426 ataacttatgacatgttcataggttgttttcagcttatttctataggct 46201378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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