View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556-INSERTION-18 (Length: 542)
Name: NF0556-INSERTION-18
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-18 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Original strand, 40180191 - 40180714
Alignment:
| Q |
7 |
atatttgattactattcttagcattgttcaagcagataagtagatagctttttcttactattcttagcatgtgtttgtaagaatgtttgattaatgtgat |
106 |
Q |
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| T |
40180191 |
atatttgattactattcttagcattgttcaagcagataagtagatagctttttcttactattcttagcatgtgtttgtaagaatgtttgattaatgtgat |
40180290 |
T |
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| Q |
107 |
cttgaaattgttagaagagtcatggagttcggtcaattgtacttacgtctccgactgcagagaggctgcattgcaatacctttctattctcactaaaaaa |
206 |
Q |
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| T |
40180291 |
cttgaaattgttagaacagccatggagttcggtcaattgtacttacgtctccgactgcagagaggctgcattgcaatacctttctattctcactaaaaaa |
40180390 |
T |
|
| Q |
207 |
cttagggtttaaaagtacaacgtgcgattatatactatgctccagcaatccggttcacaatattacccttaaaccgtacgtccgttaattggtaaactat |
306 |
Q |
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| T |
40180391 |
cttagggtttaaaagtacaacgtgcgattatatactatgctccagcaatccggttcacaatattacccttaaaccgtacgtccgtttattggtaaactat |
40180490 |
T |
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| Q |
307 |
aaggcatgagccatatccaacataattgaattgattttttaaagctaatttgataaaattcgatctaaagtaaagtggtttatcttcggatgattttaca |
406 |
Q |
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| T |
40180491 |
aaggcatgagccatatcgaacataattgaattgattttgtaaagctaatttgataaaatttgatctaaagtaaagtggtttatcttcggatgattttaca |
40180590 |
T |
|
| Q |
407 |
ctaaaatcaatactaatgtattactgagtgcaaacaatgaatcactacacaaaaattctaagagacttgagagtgagagaagaagcttacagagaattag |
506 |
Q |
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| T |
40180591 |
ctaaaatcaatactaatgtattactgagtgcaaacaatgaatcactacacaaaaattctaagagacttgagagtgagagaagaagcttacagagaattag |
40180690 |
T |
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| Q |
507 |
agaaaaaagcacctggttcatttt |
530 |
Q |
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| T |
40180691 |
tgaaaaaagcacctggttcatttt |
40180714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 18030695 - 18030655
Alignment:
| Q |
126 |
tcatggagttcggtcaattgtacttacgtctccgactgcag |
166 |
Q |
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| T |
18030695 |
tcatggagttcggccaattgtgcttacgtctctgactgcag |
18030655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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