View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556-INSERTION-19 (Length: 670)
Name: NF0556-INSERTION-19
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 8 - 670
Target Start/End: Original strand, 47624458 - 47625120
Alignment:
| Q |
8 |
cgaagaatatgccaacagctagtgagtgctcgattgtttcacatttttctttgcttacnnnnnnnnntaacaagtgagtgcactattcatcggtcttcaa |
107 |
Q |
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| T |
47624458 |
cgaacaatatgccaacagctagtgagtgctcgattgtttcacacttttctttgcttacaaaaaaaaataacaagtgagtgctctattcatcggtcttcaa |
47624557 |
T |
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| Q |
108 |
atgttaatcaagctttgttaagccgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggat |
207 |
Q |
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| T |
47624558 |
atgttaatcaagctttgttaagctgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggat |
47624657 |
T |
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| Q |
208 |
aatgcagtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaa |
307 |
Q |
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| T |
47624658 |
aatgcagtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaa |
47624757 |
T |
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| Q |
308 |
tgcttgtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactgtctagcaaatccttcatcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47624758 |
tgcttgtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcc |
47624857 |
T |
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| Q |
408 |
cattgagtaattttatcttcatatctttgacaagaacctgttgaaaaaggagaccagagagcacatgtataaaccattgcatgaaactttatagtacagt |
507 |
Q |
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| T |
47624858 |
cattgagcaattttatcttcatatctttgacaagaacctgttgaaaaaggagaccagagagcacatgtataaaccattgcatgaaactttatagtacagt |
47624957 |
T |
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| Q |
508 |
tatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaacgatatttagatcattgtctaccacagcaaaacttgca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624958 |
tatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaacgatatttagatcattgtctaccacagcaaaacttgca |
47625057 |
T |
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| Q |
608 |
ggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagc |
670 |
Q |
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| T |
47625058 |
ggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagc |
47625120 |
T |
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