View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556-INSERTION-6 (Length: 210)
Name: NF0556-INSERTION-6
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556-INSERTION-6 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 4043 - 3847
Alignment:
| Q |
8 |
gtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgc |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4043 |
gtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgc |
3944 |
T |
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| Q |
108 |
taccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaacacgaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
3943 |
taccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaa |
3847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 21447493 - 21447689
Alignment:
| Q |
8 |
gtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgc |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447493 |
gtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgc |
21447592 |
T |
|
| Q |
108 |
taccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaacacgaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
21447593 |
taccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaa |
21447689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 40685124 - 40685001
Alignment:
| Q |
8 |
gtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatctgc |
107 |
Q |
| |
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||||| ||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| | | |
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| T |
40685124 |
gtagaggcccataacaaggggttttccttttcattagcaaaacctctcatcatgtgcctaatggaatcagttgatacaactgttgtgattcccagccgac |
40685025 |
T |
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| Q |
108 |
taccctgaagtgaagatataaata |
131 |
Q |
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| T |
40685024 |
ttccctgaagtaaagatataaata |
40685001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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