View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0556-INSERTION-9 (Length: 552)

Name: NF0556-INSERTION-9
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0556-INSERTION-9
NF0556-INSERTION-9
[»] chr7 (23 HSPs)
chr7 (8-459)||(41703098-41703559)
chr7 (479-552)||(25453142-25453215)
chr7 (479-552)||(43266280-43266353)
chr7 (479-542)||(10600040-10600103)
chr7 (487-552)||(10600288-10600353)
chr7 (479-552)||(42617925-42617998)
chr7 (479-552)||(42618250-42618323)
chr7 (479-541)||(23058779-23058841)
chr7 (479-541)||(32934698-32934760)
chr7 (479-552)||(27138280-27138353)
chr7 (479-552)||(32068110-32068183)
chr7 (479-552)||(43266605-43266678)
chr7 (486-552)||(25628499-25628565)
chr7 (479-541)||(46204435-46204497)
chr7 (479-552)||(22081898-22081971)
chr7 (479-552)||(28890593-28890666)
chr7 (479-552)||(33828313-33828386)
chr7 (485-541)||(32680615-32680671)
chr7 (485-552)||(6571033-6571100)
chr7 (485-552)||(25628817-25628884)
chr7 (485-552)||(32934368-32934435)
chr7 (479-552)||(32068435-32068508)
chr7 (479-539)||(32688572-32688632)
[»] chr6 (11 HSPs)
chr6 (485-552)||(21836369-21836436)
chr6 (479-552)||(7905257-7905330)
chr6 (479-552)||(22502788-22502861)
chr6 (479-552)||(7161143-7161216)
chr6 (480-552)||(31407217-31407289)
chr6 (485-552)||(32593510-32593577)
chr6 (479-541)||(22503124-22503186)
chr6 (479-535)||(31406892-31406948)
chr6 (479-541)||(6517517-6517579)
chr6 (486-552)||(21836053-21836118)
chr6 (479-541)||(7160818-7160880)
[»] chr5 (9 HSPs)
chr5 (479-552)||(17544387-17544460)
chr5 (479-540)||(8875618-8875679)
chr5 (485-552)||(16157196-16157263)
chr5 (479-541)||(8875463-8875525)
chr5 (487-541)||(30005175-30005229)
chr5 (485-552)||(38475340-38475407)
chr5 (479-541)||(3656768-3656830)
chr5 (479-532)||(20153274-20153327)
chr5 (186-234)||(3315239-3315287)
[»] scaffold0388 (1 HSPs)
scaffold0388 (479-552)||(12578-12651)
[»] scaffold0006 (2 HSPs)
scaffold0006 (479-552)||(222128-222201)
scaffold0006 (486-552)||(221812-221877)
[»] chr8 (19 HSPs)
chr8 (479-552)||(8998028-8998101)
chr8 (486-541)||(42945464-42945519)
chr8 (479-541)||(44664522-44664584)
chr8 (479-552)||(7983442-7983515)
chr8 (479-552)||(8997870-8997943)
chr8 (479-552)||(35634438-35634511)
chr8 (479-552)||(44664847-44664920)
chr8 (486-552)||(25124584-25124650)
chr8 (479-552)||(234079-234152)
chr8 (479-552)||(710490-710563)
chr8 (479-552)||(747702-747775)
chr8 (479-552)||(871597-871670)
chr8 (479-552)||(6471704-6471777)
chr8 (479-552)||(10445674-10445747)
chr8 (487-552)||(37542246-37542311)
chr8 (479-552)||(41353588-41353661)
chr8 (485-541)||(15229951-15230007)
chr8 (485-552)||(15230270-15230337)
chr8 (503-543)||(9065703-9065743)
[»] chr4 (18 HSPs)
chr4 (479-552)||(3032596-3032669)
chr4 (479-552)||(54858574-54858647)
chr4 (479-552)||(54858899-54858972)
chr4 (479-552)||(10408228-10408301)
chr4 (479-541)||(39701259-39701321)
chr4 (491-552)||(5818114-5818175)
chr4 (479-552)||(10407903-10407976)
chr4 (479-540)||(11523963-11524024)
chr4 (479-552)||(27068924-27068997)
chr4 (479-552)||(27069249-27069322)
chr4 (479-552)||(45463087-45463160)
chr4 (487-541)||(52573250-52573304)
chr4 (479-552)||(16605616-16605689)
chr4 (479-540)||(22717953-22718014)
chr4 (479-540)||(22987202-22987263)
chr4 (479-540)||(45463424-45463485)
chr4 (479-552)||(50504164-50504237)
chr4 (479-515)||(52573604-52573640)
[»] chr3 (25 HSPs)
chr3 (479-552)||(3469539-3469612)
chr3 (479-552)||(32306438-32306511)
chr3 (479-541)||(29685955-29686017)
chr3 (479-541)||(41421986-41422048)
chr3 (479-531)||(33506192-33506244)
chr3 (478-541)||(35643864-35643927)
chr3 (479-541)||(33156346-33156408)
chr3 (479-541)||(40788770-40788832)
chr3 (479-552)||(32306763-32306836)
chr3 (479-552)||(37778612-37778685)
chr3 (479-519)||(13949067-13949107)
chr3 (485-552)||(52032158-52032225)
chr3 (479-541)||(3596123-3596185)
chr3 (479-533)||(3596432-3596485)
chr3 (479-541)||(10294581-10294643)
chr3 (479-541)||(29118888-29118950)
chr3 (487-552)||(3469222-3469287)
chr3 (479-552)||(13948794-13948867)
chr3 (479-552)||(29118541-29118614)
chr3 (499-552)||(43998179-43998232)
chr3 (479-540)||(52032490-52032551)
chr3 (479-535)||(6956262-6956318)
chr3 (479-539)||(33154891-33154951)
chr3 (485-541)||(36150547-36150603)
chr3 (479-539)||(47856401-47856461)
[»] chr2 (6 HSPs)
chr2 (479-552)||(8710807-8710880)
chr2 (479-552)||(28226083-28226156)
chr2 (479-552)||(15604353-15604426)
chr2 (503-539)||(39935493-39935529)
chr2 (479-552)||(8342518-8342591)
chr2 (479-552)||(11830378-11830451)
[»] chr1 (22 HSPs)
chr1 (479-552)||(40714458-40714531)
chr1 (479-552)||(49955686-49955759)
chr1 (485-541)||(45749862-45749918)
chr1 (479-552)||(17188968-17189041)
chr1 (479-541)||(37929432-37929494)
chr1 (479-541)||(40714793-40714855)
chr1 (479-552)||(17189190-17189263)
chr1 (479-552)||(35040953-35041026)
chr1 (479-552)||(49955361-49955434)
chr1 (485-541)||(32558457-32558513)
chr1 (485-552)||(17662191-17662258)
chr1 (479-526)||(25885358-25885405)
chr1 (485-552)||(28324825-28324891)
chr1 (479-534)||(45750199-45750254)
chr1 (479-552)||(12905998-12906071)
chr1 (479-552)||(20760844-20760917)
chr1 (479-552)||(28325143-28325215)
chr1 (479-515)||(8898531-8898567)
chr1 (479-515)||(30326510-30326546)
chr1 (186-234)||(31605852-31605900)
chr1 (485-541)||(37578544-37578600)
chr1 (197-237)||(39966128-39966168)
[»] scaffold0328 (1 HSPs)
scaffold0328 (485-552)||(11479-11546)
[»] scaffold0771 (2 HSPs)
scaffold0771 (479-519)||(1207-1247)
scaffold0771 (479-552)||(934-1007)


Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 41703559 - 41703098
Alignment:
Q  8 tcctatgcataattaggattgaagatcaagagtgaagtatacataaagtggtttctgtttgataataacaagtgtattgtgtaatagtgagcctaatatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41703559 tcctatgcataattaggattgaagatcaagagtgaagtatacataaagtggtttctgtttgataataacaagtgtattgtgtaatagcgagcctaatatt 41703460  T
Q  108 taattattaagctgtgttatttgtgacagaaaaaattcagttagaatacttattttattaagtttagtagataactattgttagcttgagaccttgaagt 207  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  41703459 taattattaagctgtgttatttatgacagaaaaaattcagctagaatacttatcttattaagtttagtagataactattgttagcttgagaccttggagt 41703360  T
Q  208 gtactcctcctcaaggtttcatgttcgtttagtttctcnnnnnnnnnnnnnnnngaatataacaagttgtcacagtcttgtaagtgcaattcggttggta 307  Q
    || |||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||    
T  41703359 gtgctcctcctcaaggtttcatgttcgtttagtttctcaaaaaaaataaaaaatgaatataacaagttgtcacagtcttgtaagtgcaattcggttggta 41703260  T
Q  308 acttcaagaacatatatattgatatgtaggggttggggggtttgaacaacgaat----------tccccacttctccccacttatagtgtaggagtctag 397  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||| |||          |||||||||||||||||||||||||||||||||| |    
T  41703259 actccatgaacatatatattgatatgtaggggttggggggtttgaacaacaaattccccacttctccccacttctccccacttatagtgtaggagtctgg 41703160  T
Q  398 tcactaggctactcggccaaaaaataaattgttgcaaattagtcatccacacaacacaaata 459  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41703159 tcactaggctactcggctaaaaaataaattgttgcaaattagtcatccacacaacacaaata 41703098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 25453142 - 25453215
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | |||||||| ||||||||||||||  |||||||||    
T  25453142 tttcgtccttgcaattaggcgtcatttaaaaattagtccctataatcgctaatcctgacaatttacccttgcat 25453215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 43266280 - 43266353
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||||||||||||||||||  |||||||||    
T  43266280 tttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcctgacaatttacccttgcat 43266353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 479 - 542
Target Start/End: Original strand, 10600040 - 10600103
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatta 542  Q
    ||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||    
T  10600040 tttcgtccttgcaattaggcgtcatttaaaaattagtccctataatcgttaatcctggcaatta 10600103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 552
Target Start/End: Complemental strand, 10600353 - 10600288
Alignment:
Q  487 ttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  10600353 ttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctgacaatttacccttgcat 10600288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 42617925 - 42617998
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  42617925 tttcgtccttgcaattaggcgtcatttaaaaattagtccctttaatcgctaatcctgacaatttacccttgcat 42617998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 42618323 - 42618250
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||||| | |||||| |||||||| |||||  |||||||||    
T  42618323 tttcgtccttgcaattaggcgtcatttaaaaattagttcctgtaatcgctaatcctggcaatttacccttgcat 42618250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 23058841 - 23058779
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||| | ||| ||||||||||||||| |||||    
T  23058841 tttcgtccttgcaattcggcgtcatttaaaaattaatccttgtaatcgttaatcctggcaatt 23058779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 32934760 - 32934698
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||    
T  32934760 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatt 32934698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 27138353 - 27138280
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||| ||||  |||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  27138353 tttcgtcctttcaatcaggcgtcatttaaaaattagtccttgtaatcgctaatcctgacaatttacccttgcat 27138280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 32068110 - 32068183
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| | |||||||||||||||||| ||| |||||| |||||||| |||||  |||||||||    
T  32068110 tttcgtccttgcaattagacgtcatttaaaaattagtccttgtaatcgctaatcctggcaatttacccttgcat 32068183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 43266678 - 43266605
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||| |||||||||  |||||||||    
T  43266678 tttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaattctgacaatttacccttgcat 43266605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 25628499 - 25628565
Alignment:
Q  486 cttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||||||| ||||||||||||||||||||  || |||||| |||||||| |||||  |||||||||    
T  25628499 cttgcaattaggcgtcatttaaaaattagtcattgtaatcgataatcctggcaatttacccttgcat 25628565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 46204435 - 46204497
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||| ||||||||||    
T  46204435 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaaacctgacaatt 46204497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 22081971 - 22081898
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| ||||||||||  ||||||||||||||||||||  | |||||| |||||||| |||||  |||||||||    
T  22081971 tttcgtccttgcaattatgcgtcatttaaaaattagtttctgtaatcgctaatcctggcaatttacccttgcat 22081898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 28890593 - 28890666
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| | |||||||||||||||||| ||| |||||| |||||||  |||||  |||||||||    
T  28890593 tttcgtccttgcaattagacgtcatttaaaaattagtccttgtaatcgctaatcctagcaatttacccttgcat 28890666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 33828386 - 33828313
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| || |||||||||||||||||   | |||||| ||||||||||||||  |||||||||    
T  33828386 tttcgtccttgcaattaggtgtcatttaaaaattagtctctgtaatcgctaatcctgacaatttacccttgcat 33828313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 32680615 - 32680671
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||||| ||||||||||||||||| |||| | |||| | ||||||||||||||    
T  32680615 ccttgcaattaggcgtcatttaaaaattcgttcctgtaattgctaatcctgacaatt 32680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 6571033 - 6571100
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| || ||| |||||||||| || | | |||||||||||||||||||||  |||||||||    
T  6571033 ccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctgacaatttacccttgcat 6571100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 25628884 - 25628817
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||||||||  |||||||||||||||||||   | |||||| ||||||||||||||  |||||||||    
T  25628884 ccttgcaattatgcgtcatttaaaaattagtctatgtaatcgctaatcctgacaatttacccttgcat 25628817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 32934368 - 32934435
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| || |||||||||||||||||   | |||||| ||||||||||||||  |||||||||    
T  32934368 ccttgcaattaggtgtcatttaaaaattagtcgctgtaatcgctaatcctgacaatttacccttgcat 32934435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 32068508 - 32068435
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| || ||||||||||||||| | | | |||||| |||||||| |||||  |||||||||    
T  32068508 tttcgtccttgcaattaggagtcatttaaaaattaatccctgtaatcgctaatcctgccaatttacccttgcat 32068435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 539
Target Start/End: Complemental strand, 32688632 - 32688572
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaa 539  Q
    ||||| |||||||||| || ||||||||||| || || ||| |||||| ||||||||||||    
T  32688632 tttcgcccttgcaattaggggtcatttaaaatttggtccttgtaatcgctaatcctgacaa 32688572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 21836436 - 21836369
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||  |||||||||    
T  21836436 ccttgcaattaggcgtcatttaaaaattagttcttgtaatcgctaatcctgacaatttacccttgcat 21836369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 7905257 - 7905330
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||  |||||||||    
T  7905257 tttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgttaatcctggcaatttacccttgcat 7905330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 22502788 - 22502861
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  22502788 tttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctgacaatttacccttgcat 22502861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 7161216 - 7161143
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | |||||||  ||||||||||||||  |||||||||    
T  7161216 tttcgtccttgcaattaggcgtcatttaaaaattagtccctataatcactaatcctgacaatttacccttgcat 7161143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 31407289 - 31407217
Alignment:
Q  480 ttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  31407289 ttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcat 31407217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 32593510 - 32593577
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||| ||||| |||||||||||||||||||| | |||||||| ||||||||||||||  |||||||||    
T  32593510 cctttcaattaggcgtcatttaaaaattagtccctataatcgctaatcctgacaatttacccttgcat 32593577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 22503186 - 22503124
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| ||| |||||| |||||||| |||||    
T  22503186 tttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctggcaatt 22503124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 31406892 - 31406948
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctg 535  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||||||||||||    
T  31406892 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctg 31406948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 6517517 - 6517579
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||||||||||||||||||  || |||||| |||||||| |||||    
T  6517517 tttcgtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgctaatcctggcaatt 6517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 21836053 - 21836118
Alignment:
Q  486 cttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||||||| ||||||||||||||||||| |||| |||||| |||||||| |||||  |||||||||    
T  21836053 cttgcaattaggcgtcatttaaaaattag-tcttgtaatcgctaatcctggcaatttacccttgcat 21836118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 7160818 - 7160880
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||||||||||||||||||   | |||||| |||||||| |||||    
T  7160818 tttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctggcaatt 7160880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 17544460 - 17544387
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||| |||||  |||||||||    
T  17544460 tttcgtccttgcaattaggcgtcatttaaaaattagttcctgtaatcgttaatcctggcaatttacccttgcat 17544387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 8875679 - 8875618
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaat 540  Q
    ||||| |||||||||| |||||||||||||||||||| | | ||||||||||||||| ||||    
T  8875679 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaat 8875618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 16157263 - 16157196
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| || ||| |||||||||| || | |||||||||||||||||||||||  |||||||||    
T  16157263 ccttgcaattaggggtcgtttaaaaattggtccctataatcgttaatcctgacaatttacccttgcat 16157196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 8875463 - 8875525
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| ||||||||||  ||||||||||||||||||| | | ||||||||||||||| |||||    
T  8875463 tttcgtccttgcaattaagcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatt 8875525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 30005175 - 30005229
Alignment:
Q  487 ttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||| || ||||||||||||||||||| |||||| | ||||||||||||||    
T  30005175 ttgcaattaggtgtcatttaaaaattagttcatataattgctaatcctgacaatt 30005229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 38475407 - 38475340
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| || ||| |||||||||| || | | |||||||||||||||||||||  |||||||||    
T  38475407 ccttgcaattaggggtcgtttaaaaattggtccatgtaatcgttaatcctgacaatttacccttgcat 38475340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 3656830 - 3656768
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||||||||||| | ||||||||||||||||||  || |||||| |||| |||| ||||    
T  3656830 tttcgaccttgcaattagacgtcatttaaaaattagtctttgtaatcgctaattctgataatt 3656768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 20153327 - 20153274
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatc 532  Q
    ||||| |||||||||| || ||||||||||||||||| ||| |||||| |||||    
T  20153327 tttcgtccttgcaattaggtgtcatttaaaaattagtccttgtaatcgctaatc 20153274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 3315239 - 3315287
Alignment:
Q  186 tgttagcttgagaccttgaagtgtactcctcctcaaggtttcatgttcg 234  Q
    |||||||||||||||||| ||||  |||||||||||||| ||| |||||    
T  3315239 tgttagcttgagaccttggagtgcgctcctcctcaaggtctcaggttcg 3315287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 12651 - 12578
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | ||||||||||||||| |||||  |||||||||    
T  12651 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatttacccttgcat 12578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 222201 - 222128
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  222201 tttcgtccttgcaattaggcgtcatttaaaaattagtacatgtaatcgctaatcctgacaatttacccttgcat 222128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 221812 - 221877
Alignment:
Q  486 cttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||||||| ||||||||||||||||||| |||| |||||| |||||||| |||||  |||||||||    
T  221812 cttgcaattaggcgtcatttaaaaattag-tcttgtaatcgctaatcctggcaatttacccttgcat 221877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 8998101 - 8998028
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||||| | |||||| ||||| ||||||||  |||||||||    
T  8998101 tttcgtccttgcaattaggcgtcatttaaaaattagttcatgtaatcgctaatcatgacaatttacccttgcat 8998028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 541
Target Start/End: Complemental strand, 42945519 - 42945464
Alignment:
Q  486 cttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||    
T  42945519 cttgcaattaggcgtcatttaaaaattagttcctgtaatcgctaatcctgacaatt 42945464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 44664522 - 44664584
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | ||||||||||||||| |||||    
T  44664522 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatt 44664584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 7983442 - 7983515
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  7983442 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 7983515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 8997870 - 8997943
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | |  ||||| ||||||||||||||  |||||||||    
T  8997870 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgcaatcgctaatcctgacaatttacccttgcat 8997943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 35634511 - 35634438
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| ||||||||||  ||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  35634511 tttcgtccttgcaattaagcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcat 35634438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 44664920 - 44664847
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||||||||||||||||||||   | |||||| ||||||||||||||  |||||||||    
T  44664920 tttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctgacaatttacccttgcat 44664847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 25124584 - 25124650
Alignment:
Q  486 cttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  25124584 cttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaatcctggcaatttacccttgcat 25124650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 234152 - 234079
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||| |||||||||| |||||  |||||||||    
T  234152 tttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttacccttgcat 234079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 710563 - 710490
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||| |||||||||| |||||  |||||||||    
T  710563 tttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttacccttgcat 710490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 747775 - 747702
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||| |||||||||| |||||  |||||||||    
T  747775 tttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttacccttgcat 747702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 871670 - 871597
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||| |||||||||| |||||  |||||||||    
T  871670 tttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttacccttgcat 871597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 6471704 - 6471777
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||| |||   |||||||| |||||||| |||||  |||||||||    
T  6471704 tttcgtccttgcaattaggcgtcatttaaaaatgagtctctataatcgctaatcctggcaatttacccttgcat 6471777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 10445747 - 10445674
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| || ||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  10445747 tttcgtccttgcaattaggtgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 10445674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 552
Target Start/End: Original strand, 37542246 - 37542311
Alignment:
Q  487 ttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||| |||||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  37542246 ttgcaattaggcgtcatttaaaaattagtccctttaatcgctaatcctggcaatttacccttgcat 37542311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 41353588 - 41353661
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||| ||||| |||||||||||||||||||||  | |||||| ||||||| ||||||  |||||||||    
T  41353588 tttcgtccttacaattaggcgtcatttaaaaattagtttctgtaatcgctaatcctaacaatttacccttgcat 41353661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 15229951 - 15230007
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||    
T  15229951 ccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatt 15230007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 15230337 - 15230270
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| || ||||||||||||||||| | | |||||| ||||| ||||||||  |||||||||    
T  15230337 ccttgcaattaggtgtcatttaaaaattagtccctgtaatcgctaatcttgacaatttacccttgcat 15230270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 9065703 - 9065743
Alignment:
Q  503 tttaaaaattagttcttataatcgttaatcctgacaattac 543  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  9065703 tttaaaaattggtccctataatcgttaatcctgacaattac 9065743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 3032596 - 3032669
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| ||| |||||| |||||||| |||||  |||||||||    
T  3032596 tttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctggcaatttacccttgcat 3032669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 54858574 - 54858647
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  54858574 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcat 54858647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 54858972 - 54858899
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | ||||||||||||||| |||||  |||||||||    
T  54858972 tttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcctggcaatttacccttgcat 54858899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 10408301 - 10408228
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  10408301 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 10408228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 39701321 - 39701259
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||||||||||||||||||   | |||||||||||| ||||||||    
T  39701321 tttcgtccttgcaattaggcgtcatttaaaaattagtctatgtaatcgttaatcttgacaatt 39701259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 5818175 - 5818114
Alignment:
Q  491 aattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||| |||||||||||||||||||| | | ||||||||||||||| |||||  |||||||||    
T  5818175 aattaggcgtcatttaaaaattagtccctgtaatcgttaatcctgtcaatttacccttgcat 5818114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 10407903 - 10407976
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| || ||||||||||||||| | | | |||||| ||||||||||||||  |||||||||    
T  10407903 tttcgtccttgcaattaggagtcatttaaaaattactccctgtaatcgctaatcctgacaatttacccttgcat 10407976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 11523963 - 11524024
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaat 540  Q
    ||||| |||||||||| ||||||||||||||||||||   | ||||||||||||||| ||||    
T  11523963 tttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgttaatcctggcaat 11524024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 27068924 - 27068997
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  27068924 tttcgtccttgcaattaggcatcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 27068997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 27069322 - 27069249
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||| | |||||||| |||||  |||||||||    
T  27069322 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaattgctaatcctggcaatttacccttgcat 27069249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 45463087 - 45463160
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||||||||||||||||||||   | |||||| |||||||| |||||  |||||||||    
T  45463087 tttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctggcaatttacccttgcat 45463160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 52573250 - 52573304
Alignment:
Q  487 ttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||| |||||||||||||||||||| | | |||||| |||||||| |||||    
T  52573250 ttgcaattaggcgtcatttaaaaattagtacctgtaatcgctaatcctggcaatt 52573304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 16605616 - 16605689
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| || ||||||||||||||||| | | ||||||| || |||| |||||  |||||||||    
T  16605616 tttcgtccttgcaattaggtgtcatttaaaaattagtccctgtaatcgtcaaacctgccaatttacccttgcat 16605689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 22717953 - 22718014
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaat 540  Q
    ||||| |||| ||||| | |||||||||||||||||| | | |||||| |||||||||||||    
T  22717953 tttcgtccttacaattagacgtcatttaaaaattagtccatgtaatcgctaatcctgacaat 22718014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 22987263 - 22987202
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaat 540  Q
    ||||| |||| ||||| | |||||||||||||||||| | | |||||| |||||||||||||    
T  22987263 tttcgtccttacaattagacgtcatttaaaaattagtccatgtaatcgctaatcctgacaat 22987202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 45463485 - 45463424
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaat 540  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||| | |||||||| ||||    
T  45463485 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaattgctaatcctggcaat 45463424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 50504237 - 50504164
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| ||||| |||| ||||||||||||||||||||   | ||||||||||||| | |||||  |||||||||    
T  50504237 tttcgtccttgtaattaggcgtcatttaaaaattagtctctgtaatcgttaatccaggcaatttacccttgcat 50504164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 52573640 - 52573604
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagt 515  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  52573640 tttcgtccttgcaattaggcgtcatttaaaaattagt 52573604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 3469612 - 3469539
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||||| | |||||| |||||||| |||||  |||||||||    
T  3469612 tttcgtccttgcaattaggcgtcatttaaaaattagttcctgtaatcgctaatcctggcaatttacccttgcat 3469539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 32306438 - 32306511
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||||| | |||||| ||||| ||||||||  |||||||||    
T  32306438 tttcgtccttgcaattaggcgtcatttaaaaattagttcatgtaatcgctaatcttgacaatttacccttgcat 32306511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 29685955 - 29686017
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||    
T  29685955 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatt 29686017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 41421986 - 41422048
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||||| |||||||||||||| | |||||||||||| ||||||||    
T  41421986 tttcgtccttgcaattaggcgtcagttaaaaattagttcctgtaatcgttaatcttgacaatt 41422048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 33506192 - 33506244
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaat 531  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||| ||||    
T  33506192 tttcgtccttgcaattaggcgtcatttaaaaattagttcctataatcgctaat 33506244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 541
Target Start/End: Original strand, 35643864 - 35643927
Alignment:
Q  478 ttttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||    
T  35643864 ttttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatt 35643927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 33156408 - 33156346
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||||||||||||||||||  || |||||||||||| || |||||    
T  33156408 tttcgtccttgcaattaggcgtcatttaaaaattagtcattgtaatcgttaatcttggcaatt 33156346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 40788832 - 40788770
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||    
T  40788832 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatt 40788770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 32306836 - 32306763
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||||||||||||||||||||   | |||||| |||||||| |||||  |||||||||    
T  32306836 tttcgtccttgcaattaggcgtcatttaaaaattagtcaatgtaatcgctaatcctggcaatttacccttgcat 32306763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 37778685 - 37778612
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||| | |||||||| |||||  |||||||||    
T  37778685 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaattgctaatcctggcaatttacccttgcat 37778612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 13949107 - 13949067
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttctt 519  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  13949107 tttcgtccttgcaattaggcgtcatttaaaaattagttctt 13949067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 52032158 - 52032225
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| |||||||||||||||||| | ||| |||||| |||||||  |||||  |||||||||    
T  52032158 ccttgcaattaggcgtcatttaaaaattaatccttgtaatcgctaatcctagcaatttacccttgcat 52032225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 3596123 - 3596185
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||| ||||||||||||||   | |||||| ||||||||||||||    
T  3596123 tttcgtccttgcaattaggcgtgatttaaaaattagtcaatgtaatcgctaatcctgacaatt 3596185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 3596485 - 3596432
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcc 533  Q
    ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  3596485 tttcgtccttgcaattaggcgtgatttaaaaattag-tcttgtaatcgttaatcc 3596432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 10294581 - 10294643
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||| | ||||| ||||||||    
T  10294581 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaattgctaatcatgacaatt 10294643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 29118950 - 29118888
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| ||||||||||||||||||||   | |||||| |||||||| |||||    
T  29118950 tttcgtccttgcaattaggcgtcatttaaaaattagtcactgtaatcgctaatcctggcaatt 29118888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 552
Target Start/End: Original strand, 3469222 - 3469287
Alignment:
Q  487 ttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||| |||||||||||||||||||| | | |||||  |||||||| |||||  |||||||||    
T  3469222 ttgcaattaggcgtcatttaaaaattagtccatgtaatcactaatcctggcaatttacccttgcat 3469287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 13948794 - 13948867
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||||| ||||| || |||||  |||||||||    
T  13948794 tttcgtccttgcaattaggcatcatttaaaaattagtccatgtaatcgctaatcttggcaatttacccttgcat 13948867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 29118541 - 29118614
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| ||||||||||  ||||||||||||||||||| | | |||||| |||| ||| |||||  |||||||||    
T  29118541 tttcgtccttgcaattatgcgtcatttaaaaattagtccctgtaatcgctaattctggcaatttacccttgcat 29118614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 43998179 - 43998232
Alignment:
Q  499 gtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||||||||||||||| ||| ||||||||||| ||| |||||  |||||||||    
T  43998179 gtcatttaaaaattagtccttgtaatcgttaattctggcaatttacccttgcat 43998232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 540
Target Start/End: Complemental strand, 52032551 - 52032490
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaat 540  Q
    ||||| |||||||||| | |||||||||||||||||| | | |||||| |||||||| ||||    
T  52032551 tttcgtccttgcaattagacgtcatttaaaaattagtccctgtaatcgctaatcctggcaat 52032490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 6956262 - 6956318
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctg 535  Q
    ||||| || ||||||| ||  |||||||||||||||| | |||||||||||||||||    
T  6956262 tttcgtccctgcaattagggatcatttaaaaattagtccctataatcgttaatcctg 6956318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 33154891 - 33154951
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaa 539  Q
    ||||| || ||||||| || |||||||||||||| || | | |||||||||||||||||||    
T  33154891 tttcgtccatgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctgacaa 33154951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 36150547 - 36150603
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||||| || ||| |||||||||| || |||||| | ||||||||||||||||    
T  36150547 ccttgcaattaggggtcgtttaaaaattggtccttatatttgttaatcctgacaatt 36150603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 539
Target Start/End: Original strand, 47856401 - 47856461
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaa 539  Q
    ||||| || |||||||  ||||| |||||||||| || ||| |||||||||||||||||||    
T  47856401 tttcgtccctgcaattaagcgtcgtttaaaaattggtccttgtaatcgttaatcctgacaa 47856461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 8710880 - 8710807
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  8710880 tttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaatcctgacaatttacccttgcat 8710807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 28226156 - 28226083
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  28226156 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 28226083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 15604353 - 15604426
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| || ||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  15604353 tttcgtccttgcaattaggtgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 15604426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 39935493 - 39935529
Alignment:
Q  503 tttaaaaattagttcttataatcgttaatcctgacaa 539  Q
    |||||||||| ||||||||||||||||||||||||||    
T  39935493 tttaaaaattggttcttataatcgttaatcctgacaa 39935529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 8342591 - 8342518
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||| ||||| ||||||||||||||||||||   | |||||  ||||||||||||||  |||||||||    
T  8342591 tttcgtccttacaattaggcgtcatttaaaaattagtctctgtaatcaataatcctgacaatttacccttgcat 8342518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 11830378 - 11830451
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| | |||||||||||||||||| | | |||| | ||||||| ||||||  |||||||||    
T  11830378 tttcgtccttgcaattagacgtcatttaaaaattagtccctgtaattgctaatcctaacaatttacccttgcat 11830451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 40714458 - 40714531
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | ||||||||||||||| |||||  |||||||||    
T  40714458 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatttacccttgcat 40714531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 49955759 - 49955686
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||||||||||||||||||||  || ||||||||||||||| |||||  |||||||||    
T  49955759 tttcgtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgttaatcctggcaatttacccttgcat 49955686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 45749862 - 45749918
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||||||||| ||||||||||||||||||||  || |||||||||||||||||||||    
T  45749862 ccttgcaattaggcgtcatttaaaaattagtctttgtaatcgttaatcctgacaatt 45749918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 17188968 - 17189041
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  17188968 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 17189041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 37929432 - 37929494
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | | |||| ||||||||||||||    
T  37929432 tttcgtccttgcaattaggcgtcatttaaaaattagtccctgttatcgctaatcctgacaatt 37929494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 40714855 - 40714793
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||| |||||||||| |||||||||||||||||||| | | |||||| |||||||| |||||    
T  40714855 tttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaatcctggcaatt 40714793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 17189263 - 17189190
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| | |||||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  17189263 tttcgtccttgcaattagacgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 17189190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 35041026 - 35040953
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| ||||| |||| | |||||||||||||||||| | | |||||| ||||||||||||||  |||||||||    
T  35041026 tttcgtccttgtaattagccgtcatttaaaaattagtccatgtaatcgctaatcctgacaatttacccttgcat 35040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 49955361 - 49955434
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  49955361 tttcgtccttgcaattaggcatcatttaaaaattagtccctgtaatcgctaatcctggcaatttacccttgcat 49955434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 32558513 - 32558457
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    |||| ||||| | |||||||||||||||||||| |||||||| ||||||||| ||||    
T  32558513 ccttacaattagacgtcatttaaaaattagttcctataatcgctaatcctgataatt 32558457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 17662258 - 17662191
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| || ||| |||||||||| |||| | ||||||||||||||| |||||  |||||||||    
T  17662258 ccttgcaatttggggtcgtttaaaaattggttcctttaatcgttaatcctggcaatttacccttgcat 17662191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 526
Target Start/End: Complemental strand, 25885405 - 25885358
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcg 526  Q
    ||||| |||||||||| |||||||||||||||||||| ||| ||||||    
T  25885405 tttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcg 25885358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 552
Target Start/End: Original strand, 28324825 - 28324891
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| |||||| ||||||| ||||||| | |||||| ||||||||||||||  |||||||||    
T  28324825 ccttgcaattaggcgtcgtttaaaa-ttagttcatgtaatcgctaatcctgacaatttacccttgcat 28324891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Complemental strand, 45750254 - 45750199
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcct 534  Q
    ||||| |||||||||| ||||||||||||||||||||  || |||||| |||||||    
T  45750254 tttcgtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgctaatcct 45750199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 12906071 - 12905998
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| | | |||||||||||||||| | | |||||| |||||||| |||||  |||||||||    
T  12906071 tttcgtccttgcaatttgacatcatttaaaaattagtccatgtaatcgctaatcctggcaatttacccttgcat 12905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 20760917 - 20760844
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||| ||||| ||||||||||||||||||||   | |||||| |||||||| |||||  |||||||||    
T  20760917 tttcgtccttacaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctggcaatttacccttgcat 20760844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 28325215 - 28325143
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||||||||||||||||||| || | |||||||||||  || |||||  |||||||||    
T  28325215 tttcggccttgcaattaggcgtcatttaaaaattag-tcatgtaatcgttaattatggcaatttacccttgcat 28325143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 8898531 - 8898567
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagt 515  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  8898531 tttcgtccttgcaattaggcgtcatttaaaaattagt 8898567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 30326510 - 30326546
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagt 515  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  30326510 tttcgtccttgcaattaggcgtcatttaaaaattagt 30326546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 31605900 - 31605852
Alignment:
Q  186 tgttagcttgagaccttgaagtgtactcctcctcaaggtttcatgttcg 234  Q
    |||| ||||| ||||||||||||| |||||||||||||| ||| |||||    
T  31605900 tgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcg 31605852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 37578600 - 37578544
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaatt 541  Q
    ||||||||||||| ||| |||||||||| ||| || |||||| |||||||| |||||    
T  37578600 ccttgcaattgggggtcgtttaaaaattggtttttgtaatcgctaatcctggcaatt 37578544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 39966128 - 39966168
Alignment:
Q  197 gaccttgaagtgtactcctcctcaaggtttcatgttcgttt 237  Q
    ||||||| |||||||||||||||||||| ||| ||||||||    
T  39966128 gaccttggagtgtactcctcctcaaggtctcaggttcgttt 39966168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 552
Target Start/End: Complemental strand, 11546 - 11479
Alignment:
Q  485 ccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    |||||||||| |||||||||||||||||||| | | ||||||||||||||| |||||  |||||||||    
T  11546 ccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcctggcaatttacccttgcat 11479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 1247 - 1207
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttctt 519  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  1247 tttcgtccttgcaattaggcgtcatttaaaaattagttctt 1207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Original strand, 934 - 1007
Alignment:
Q  479 tttcgaccttgcaattgggcgtcatttaaaaattagttcttataatcgttaatcctgacaattaccccttgcat 552  Q
    ||||| |||||||||| ||| |||||||||||||||| | | |||||| ||||| || |||||  |||||||||    
T  934 tttcgtccttgcaattaggcatcatttaaaaattagtccatgtaatcgctaatcttggcaatttacccttgcat 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1312 times since January 2019
Visitors: 3643