View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0556_high_4 (Length: 407)

Name: NF0556_high_4
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0556_high_4
NF0556_high_4
[»] chr4 (3 HSPs)
chr4 (175-312)||(2464463-2464601)
chr4 (191-318)||(6736510-6736629)
chr4 (334-377)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (210-400)||(28173413-28173596)
chr2 (176-318)||(11951637-11951782)
chr2 (175-318)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (176-318)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (176-318)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (179-312)||(45227735-45227870)
chr3 (175-316)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (175-260)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (175-318)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 2464463 - 2464601
Alignment:
Q  175 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgt 273  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2464463 agcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgt 2464562  T
Q  274 tatgatcccattgaattcttgtgactcaccatttctttg 312  Q
     ||| ||||||||||||||||||||||||||||||||||    
T  2464563 catgctcccattgaattcttgtgactcaccatttctttg 2464601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 6736629 - 6736510
Alignment:
Q  191 caaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgttatgatcccattgaat 289  Q
    |||||||||||| |||||||||||||||||||||| |||||||||         |||||   ||||||| || ||||||||||| ||| |||| ||||||    
T  6736629 caaaggatgaaacttttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtttgtcatgctcccgttgaat 6736539  T
Q  290 tcttgtgactcaccatttctttgatttca 318  Q
    ||||||||||||||||||||||| |||||    
T  6736538 tcttgtgactcaccatttctttggtttca 6736510  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 2464618 - 2464660
Alignment:
Q  334 attcacagtttgcaaaggattaaatctcttggagttttcttctt 377  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  2464618 attcacagtttgcaaaggatt-aatctcttggagttttcatctt 2464660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 210 - 400
Target Start/End: Original strand, 28173413 - 28173596
Alignment:
Q  210 tttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgttatgatcccattgaattcttgtgactcaccatttc 308  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28173413 tttaaaaattgtttggataaagaccggtgaaaacttcacttgtccattatgtccactttgtttgttatgaccccattgaattcttgtgactcaccatttc 28173512  T
Q  309 tttgatttcannnnnnnnnnnnnagattcacagtttgcaaaggattaaatctcttggagttttcttcttgtctacgaaaaacacctatgcta 400  Q
    ||||||||||             ||| ||| ||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||    
T  28173513 tttgatttca-----ttttttttagagtcagagtttgcaaaggattaaatctcttggagtt---ttcttgtctaggaaaaacacctatgcta 28173596  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 11951637 - 11951782
Alignment:
Q  176 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccatt--atgtccactttgtttg 272  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |  || |||  ||||||||||||||||    
T  11951637 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatctattaaatgtccactttgtttg 11951736  T
Q  273 ttatgatcccattgaattcttgtgactcaccatttctttgatttca 318  Q
    | ||| |||||||||||| ||||||||||||||||||||| |||||    
T  11951737 tcatgctcccattgaattattgtgactcaccatttctttggtttca 11951782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 2743968 - 2744109
Alignment:
Q  175 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgt--ccattatgtccactttgttt 271  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||||      |||| || | |  ||||||| |  |||||||||    
T  2743968 agcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 2744062  T
Q  272 gttatgatcccattgaattcttgtgactcaccatttctttgatttca 318  Q
    || ||| |||||||||||||||||||||||||||||||||| |||||    
T  2744063 gtcatgctcccattgaattcttgtgactcaccatttctttggtttca 2744109  T

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Target: scaffold0312 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 18990 - 19133
Alignment:
Q  176 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgtt 274  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||   |||||||||||||||||||||||     
T  18990 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 19089  T
Q  275 atgatcccattgaattcttgtgactcaccatttctttgatttca 318  Q
    ||| || ||||||||| ||||||||||||||||||||| |||||    
T  19090 atgctctcattgaattattgtgactcaccatttctttggtttca 19133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 176 - 318
Target Start/End: Complemental strand, 411580 - 411437
Alignment:
Q  176 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgtt 274  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||   |||||||||||||||||||||||     
T  411580 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 411481  T
Q  275 atgatcccattgaattcttgtgactcaccatttctttgatttca 318  Q
    ||| || ||||||||| ||||||||||||||||||||| |||||    
T  411480 atgctctcattgaattattgtgactcaccatttctttggtttca 411437  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 45227735 - 45227870
Alignment:
Q  179 tgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgt-ccactttgtttgttat 276  Q
    |||||||| || | |||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||   ||||||| | ||||||||||||| ||    
T  45227735 tgaatgagctttcgaaggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaattttcacttacccattattttccactttgtttgtcat 45227834  T
Q  277 gatcccattgaattcttgtgactcaccatttctttg 312  Q
    | ||||||||||||||||||||||||||||||||||    
T  45227835 gctcccattgaattcttgtgactcaccatttctttg 45227870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 175 - 316
Target Start/End: Complemental strand, 29896808 - 29896665
Alignment:
Q  175 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaa---ttgtttggtaaagaccggtgaaaacttcactcgtccattatgtccactttgttt 271  Q
    |||||||||||| ||  |||||||||| |||||||||||||||   | ||| | ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  29896808 agcatgaatgagctttaaaaggatgaa-tttttagtttaaaaaaaatggttggataaagaccggtgaaaacatcactcatccattatgtccacttggttt 29896710  T
Q  272 gttatgatcccattgaattcttgtgactcaccatttctttgattt 316  Q
    || ||| ||||||||||||||||||| ||| ||||||||||||||    
T  29896709 gtcatgctcccattgaattcttgtgattcatcatttctttgattt 29896665  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 26300227 - 26300141
Alignment:
Q  175 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgt 260  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  26300227 agcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatgaccgatgaaaacttcactcatccattatgt 26300141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 29935083 - 29935224
Alignment:
Q  175 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgt--ccattatgtccactttgttt 271  Q
    |||||||||||| || |||| ||||||| |||||||||||||||||||||| |||||||||      |||| || | |  ||||||| |  |||||||||    
T  29935083 agcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 29935177  T
Q  272 gttatgatcccattgaattcttgtgactcaccatttctttgatttca 318  Q
    || ||| ||||||||||||||||||||| |||||||||||| |||||    
T  29935178 gtcatgctcccattgaattcttgtgacttaccatttctttggtttca 29935224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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