View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556_high_5 (Length: 385)
Name: NF0556_high_5
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 375
Target Start/End: Complemental strand, 31980168 - 31979827
Alignment:
| Q |
28 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctctaggtggtc |
127 |
Q |
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| T |
31980168 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
31980069 |
T |
|
| Q |
128 |
accaaaaagctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccac------caccaacaacgttgttcctttttcaccacc |
221 |
Q |
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| T |
31980068 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccaccaacaacaacaacaacgttgttcctttttcaccacc |
31979969 |
T |
|
| Q |
222 |
accacagtcatatgtttctgaacaacatgaacaaggtggtttctttcatcatcatcaacatcattacccttattggcaacaaatggaacctatacagttt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31979968 |
accacagtcatatgtttctgaacaacatgaacaaggtggtttcttt------------catcattacccttattggcaacaaatggaacctatacagttt |
31979881 |
T |
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| Q |
322 |
caaacaccacaacaacatcatgttgaagcagcaacaaacacttttcatcctatg |
375 |
Q |
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| T |
31979880 |
caaacaccacaacaacatcatgttgaagcagcaacaaacacttttcatcctatg |
31979827 |
T |
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