View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0556_high_6 (Length: 384)

Name: NF0556_high_6
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0556_high_6
NF0556_high_6
[»] chr5 (4 HSPs)
chr5 (30-374)||(28601788-28602132)
chr5 (157-232)||(21743014-21743089)
chr5 (174-225)||(30264567-30264618)
chr5 (167-225)||(3103159-3103217)
[»] chr2 (9 HSPs)
chr2 (153-225)||(12457025-12457097)
chr2 (156-223)||(16152546-16152613)
chr2 (167-225)||(9154145-9154203)
chr2 (157-217)||(2485299-2485359)
chr2 (157-225)||(38985133-38985201)
chr2 (157-216)||(21924836-21924895)
chr2 (192-225)||(19477209-19477242)
chr2 (156-217)||(43939436-43939497)
chr2 (159-223)||(33810626-33810690)
[»] chr8 (6 HSPs)
chr8 (156-218)||(4410795-4410857)
chr8 (157-225)||(38125584-38125652)
chr8 (167-225)||(24802565-24802623)
chr8 (156-225)||(15196499-15196568)
chr8 (156-232)||(36430424-36430500)
chr8 (152-218)||(44068303-44068369)
[»] chr4 (3 HSPs)
chr4 (157-225)||(32564829-32564897)
chr4 (156-222)||(7209068-7209134)
chr4 (173-225)||(42576933-42576985)
[»] chr3 (4 HSPs)
chr3 (153-225)||(42380547-42380619)
chr3 (153-225)||(42409261-42409333)
chr3 (155-218)||(25353870-25353933)
chr3 (154-232)||(33896653-33896731)
[»] chr7 (5 HSPs)
chr7 (157-232)||(19989079-19989154)
chr7 (167-225)||(31448374-31448432)
chr7 (155-225)||(10248801-10248871)
chr7 (157-225)||(9077532-9077600)
chr7 (157-225)||(28885482-28885550)
[»] chr1 (6 HSPs)
chr1 (178-221)||(6380162-6380205)
chr1 (173-225)||(6951053-6951105)
chr1 (168-232)||(11248643-11248707)
chr1 (173-225)||(46836393-46836445)
chr1 (156-211)||(59656-59711)
chr1 (157-225)||(7255134-7255202)
[»] scaffold0001 (1 HSPs)
scaffold0001 (173-225)||(504607-504659)
[»] chr6 (3 HSPs)
chr6 (157-217)||(6865227-6865287)
chr6 (154-217)||(1520897-1520960)
chr6 (157-225)||(31144696-31144764)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 374
Target Start/End: Complemental strand, 28602132 - 28601788
Alignment:
Q  30 tcaacatgaccaagaaatattcttagaagaaaggtataaggttttctggatggtgtataatgaaagacgaatttgtcttagaattgaaactttcaaactc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602132 tcaacatgaccaagaaatattcttagaagaaaggtataaggttttctggatggtgtataatgaaagacgaatttgtcttagaattgaaactttcaaactc 28602033  T
Q  130 tttatggaaattattaccctatatttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacggacgaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||||| | ||||| |||    
T  28602032 tttatggaaattattaccctatatttatactccctctgtcctgatatataagcaccatttatctctaataaaagggtgcttagatataagaacggaggaa 28601933  T
Q  230 gtaaagttcaattctatgtaattattgttaatttaccttgggtgcttgcggccaagtatttctttttggccatattttctccaagtaaagccatcttctg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28601932 gtaaagttcaattctatgtaattattgttaatttaccttgggtgcttgcggccaagtatttctttttggccatattttctccaagtaaagccatcttctg 28601833  T
Q  330 gtggcatttcagtgtttccaatctgaggtgctggatacatctctg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28601832 gtggcatttcagtgtttccaatctgaggtgctggatacatctctg 28601788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 21743014 - 21743089
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacggacgaagta 232  Q
    ||||||||| ||||  |||| ||||||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  21743014 tactccctccgtccttatatgtaagcactctttgcctctaataaaagagtgcttagatatagggacggatgaagta 21743089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 30264567 - 30264618
Alignment:
Q  174 tatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||||||||| | |||| |||||||| ||| |||||||||||||||||||||    
T  30264567 tatataagcatcatttgcctctaataaaagagtgcttagatatagggacgga 30264618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 3103217 - 3103159
Alignment:
Q  167 gtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||| |||||||||||||||||  |||||||| ||||||| ||| ||||||| |||||    
T  3103217 gtccctatatataagcaccctttacctctaataaaagggtgtttatatataggaacgga 3103159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 12457097 - 12457025
Alignment:
Q  153 tttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  12457097 tttatactccctctgtccctatatgtaagcaccctttgcctctaataaaagggtgcttagatatagggacgga 12457025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 16152613 - 16152546
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacg 223  Q
    |||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  16152613 atactccctccgtccatatatataagcaccctttgtctctaataaaagggtgcttatatagagggacg 16152546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 9154145 - 9154203
Alignment:
Q  167 gtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||| |||| ||| ||||||||  |||||||| |||||||||||||||||||||||||    
T  9154145 gtccctatatgtaaccacccttttcctctaataaaagggtgcttagatatagggacgga 9154203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 2485359 - 2485299
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatata 217  Q
    ||||||||| ||||| |||| || ||||| ||||| ||||||||||||||| |||||||||    
T  2485359 tactccctcggtccctatatgtaggcaccatttgtttctaatataagggtgtttagatata 2485299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 38985201 - 38985133
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||||| || ||||| ||||||||||||| |||  |||||||| ||| ||||||| |||||||||||||    
T  38985201 tactccttccgtccctatatataagcaccatttccctctaataaaagagtgcttatatatagggacgga 38985133  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 21924836 - 21924895
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatat 216  Q
    ||||||||| ||||| ||||||||||||| |||  |||||||| ||||||||||| ||||    
T  21924836 tactccctccgtccctatatataagcaccttttacctctaataaaagggtgcttaaatat 21924895  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 19477209 - 19477242
Alignment:
Q  192 ctctaatataagggtgcttagatatagggacgga 225  Q
    |||||||| |||||||||||||||||||||||||    
T  19477209 ctctaataaaagggtgcttagatatagggacgga 19477242  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 43939436 - 43939497
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatata 217  Q
    ||||| |||| ||||| |||| |||||||  |||| |||||||| |||||||||||||||||    
T  43939436 atacttcctccgtccctatatgtaagcactatttgcctctaataaaagggtgcttagatata 43939497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 33810690 - 33810626
Alignment:
Q  159 ctccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacg 223  Q
    ||||||| ||||| |||| |||||||  |||  |||||||| ||||||||||| |||||||||||    
T  33810690 ctccctccgtccctatatgtaagcacaattttcctctaataaaagggtgcttacatatagggacg 33810626  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 4410795 - 4410857
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatag 218  Q
    |||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  4410795 atactccctccgtccctatatataagcaccctttgtctctaataaaagagtgcttatatatag 4410857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 38125584 - 38125652
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||| ||||  |||| |||||||| |||| |||||||| ||||||||||| |||||||||||||    
T  38125584 tactccctccgtccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacgga 38125652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 24802565 - 24802623
Alignment:
Q  167 gtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||| |||| |||||||| ||||  ||||||| |||||||||||||||||||||||||    
T  24802565 gtccctatatgtaagcaccttttgcatctaataaaagggtgcttagatatagggacgga 24802623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 15196499 - 15196568
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||||||||| ||||| |||| |||||| | |||   ||||||| |||||||||||||||||||||||||    
T  15196499 atactccctccgtccctatatgtaagcatctttttcttctaataaaagggtgcttagatatagggacgga 15196568  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 36430500 - 36430424
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacggacgaagta 232  Q
    |||||||||| ||||| |||| |||||||    || |||||||| ||||||||||| ||||||||||||| ||||||    
T  36430500 atactccctccgtccctatatgtaagcacaaggtgcctctaataaaagggtgcttaaatatagggacggaggaagta 36430424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 44068303 - 44068369
Alignment:
Q  152 atttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatag 218  Q
    ||||||||||| || || || |||| |||||| | ||||||||||||| ||| ||||||||||||||    
T  44068303 atttatactccatccgttcctatatgtaagcatcgtttgtctctaataaaagtgtgcttagatatag 44068369  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 32564829 - 32564897
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||| ||||| |||| ||||||| ||||| |||||||| ||||||||||| |||||||||||||    
T  32564829 tactccctccgtccctatatgtaagcactctttgcctctaataaaagggtgcttacatatagggacgga 32564897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 7209134 - 7209068
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggac 222  Q
    |||||||||| ||||| |||| ||||||| |||||||||||||| ||  ||||||||||||||||||    
T  7209134 atactccctccgtccctatatgtaagcactctttgtctctaataaaaaagtgcttagatatagggac 7209068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 42576933 - 42576985
Alignment:
Q  173 atatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||||||  |||| |||||||| || |||||||||||||||| |||||    
T  42576933 atatataagcacaatttgcctctaataaaatggtgcttagatataggaacgga 42576985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 42380547 - 42380619
Alignment:
Q  153 tttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||||||||| || ||||| |||| ||||||||||||| |||||||| ||||||  |||||||||||||||||    
T  42380547 tttatactccatccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacgga 42380619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 42409261 - 42409333
Alignment:
Q  153 tttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||||||||| || ||||| |||| ||||||||||||| |||||||| ||||||  |||||||||||||||||    
T  42409261 tttatactccatccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacgga 42409333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 25353933 - 25353870
Alignment:
Q  155 tatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatag 218  Q
    ||||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  25353933 tatactccctccgtctctatatataagcaccgtttgtctctaataaaagggtgcttatatatag 25353870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 33896731 - 33896653
Alignment:
Q  154 ttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacggacgaagta 232  Q
    |||||||||||| ||||| |||| ||| |||| |||| |||||||  ||||||||||| ||||||||||||| ||||||    
T  33896731 ttatactccctccgtccctatatgtaaacaccatttgcctctaatgaaagggtgcttatatatagggacggaagaagta 33896653  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 19989079 - 19989154
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacggacgaagta 232  Q
    ||||||||| || || |||| |||||||| |||| |||||||| || |||||||||||||||||||||| ||||||    
T  19989079 tactccctccgttcctatatgtaagcaccatttgcctctaataaaatggtgcttagatatagggacggaggaagta 19989154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 31448374 - 31448432
Alignment:
Q  167 gtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||| |||| |||||||||||||  ||||||| |||||||||||||||||||||||||    
T  31448374 gtccctatatgtaagcaccctttgcatctaataaaagggtgcttagatatagggacgga 31448432  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 10248801 - 10248871
Alignment:
Q  155 tatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||| |||||| |||||  ||||||||||| ||||   ||||||| |||||||||||||||||| ||||||    
T  10248801 tatattccctccgtccctctatataagcactctttacatctaataaaagggtgcttagatatagagacgga 10248871  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 9077600 - 9077532
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||||||||| |||| ||| ||| ||||  |||||||| ||| ||||||| ||||| |||||||    
T  9077600 tactccctctgtccctatatgtaaacactctttccctctaataaaagagtgcttaaatataaggacgga 9077532  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 28885482 - 28885550
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||| ||| ||||| |||| |||||||| |||  |||||||| ||||||||||| ||||| |||||||    
T  28885482 tactctctccgtccctatatgtaagcaccattttcctctaataaaagggtgcttacatataaggacgga 28885550  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 6380205 - 6380162
Alignment:
Q  178 taagcaccctttgtctctaatataagggtgcttagatataggga 221  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  6380205 taagcaccttttgtctctaataaaagggtgcttagatataggga 6380162  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 6951053 - 6951105
Alignment:
Q  173 atatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||| ||||||| ||||| |||||||| ||||||||||||||||| |||||||    
T  6951053 atatgtaagcacactttgcctctaataaaagggtgcttagatataaggacgga 6951105  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 11248707 - 11248643
Alignment:
Q  168 tcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacggacgaagta 232  Q
    |||| |||| |||||||| |||| |||||||| ||  ||||||||||||||||||||| ||||||    
T  11248707 tccctatatgtaagcaccatttgcctctaataaaatagtgcttagatatagggacggaggaagta 11248643  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 46836393 - 46836445
Alignment:
Q  173 atatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||| |||||||  |||| |||||||| |||||||||||||||||||||||||    
T  46836393 atatgtaagcacattttgcctctaataaaagggtgcttagatatagggacgga 46836445  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 59711 - 59656
Alignment:
Q  156 atactccctctgtcccgatatataagcaccctttgtctctaatataagggtgctta 211  Q
    |||||||||| ||||| ||||||||||||| ||| ||||||||| || ||||||||    
T  59711 atactccctccgtccctatatataagcaccatttatctctaataaaatggtgctta 59656  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 7255134 - 7255202
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||| ||||| |||| |||||||  |||  |||||||| ||||||||||| ||||||| |||||    
T  7255134 tactccctccgtccctatatgtaagcacattttccctctaataaaagggtgcttacatataggaacgga 7255202  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 504607 - 504659
Alignment:
Q  173 atatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    |||| |||||||| ||||||||||||| || |||||||| |||||||||||||    
T  504607 atatgtaagcaccttttgtctctaataaaaaggtgcttacatatagggacgga 504659  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 6865287 - 6865227
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatata 217  Q
    |||||||||||||||  ||| |||||| ||||||  ||||||| |||||||||||||||||    
T  6865287 tactccctctgtccctgtatgtaagcatcctttgcatctaataaaagggtgcttagatata 6865227  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 1520897 - 1520960
Alignment:
Q  154 ttatactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatata 217  Q
    ||||||||| ||  |||| |||| ||||||| ||||| |||||||| |||||||||||||||||    
T  1520897 ttatactccatccatccctatatttaagcacactttgcctctaataaaagggtgcttagatata 1520960  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 31144696 - 31144764
Alignment:
Q  157 tactccctctgtcccgatatataagcaccctttgtctctaatataagggtgcttagatatagggacgga 225  Q
    ||||||||| ||||| |||||||||||| ||||   ||||||| ||||||||||  ||||| |||||||    
T  31144696 tactccctccgtccctatatataagcactctttccttctaataaaagggtgcttctatataaggacgga 31144764  T

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