View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0556_high_8 (Length: 250)
Name: NF0556_high_8
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 31716216 - 31716414
Alignment:
| Q |
17 |
tcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagatacttgacgagcctttggaatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31716216 |
tcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagatacttgacgagcctttggaatcc |
31716315 |
T |
|
| Q |
117 |
ttttcacaccaaacttgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgtcacca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31716316 |
ttttcacaccaaacttgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgtcacca |
31716414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 31719149 - 31719353
Alignment:
| Q |
17 |
tcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagatacttgacgagcctttggaatcc |
116 |
Q |
| |
|
||||||||||| ||||| || |||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31719149 |
tcatgtgaagccaccaaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttagacacttgacgagcctttggaatcc |
31719248 |
T |
|
| Q |
117 |
ttttcacaccaaacttgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgtcaccaa |
216 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||| |
|
|
| T |
31719249 |
gtttcataccaaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgtcaacaa |
31719348 |
T |
|
| Q |
217 |
cttca |
221 |
Q |
| |
|
|||| |
|
|
| T |
31719349 |
tttca |
31719353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 31721748 - 31721958
Alignment:
| Q |
17 |
tcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagat------acttgacgagcctttg |
110 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31721748 |
tcatgtgaagcaaccaaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttg |
31721847 |
T |
|
| Q |
111 |
gaatccttttcacaccaaacttgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgt |
210 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
31721848 |
gaatccgtttcataccaaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgt |
31721947 |
T |
|
| Q |
211 |
caccaacttca |
221 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
31721948 |
caacaatttca |
31721958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 31711042 - 31711252
Alignment:
| Q |
17 |
tcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagat------acttgacgagcctttg |
110 |
Q |
| |
|
||||||||||| ||||| || |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31711042 |
tcatgtgaagccaccaaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttg |
31711141 |
T |
|
| Q |
111 |
gaatccttttcacaccaaacttgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattcttgatttttgt |
210 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
31711142 |
gaatccgtttcataccaaacttgttatcagtattaaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattcttgacttttgt |
31711241 |
T |
|
| Q |
211 |
caccaacttca |
221 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
31711242 |
caacaatttca |
31711252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 31726107 - 31726049
Alignment:
| Q |
89 |
ttagatacttgacgagcctttggaatccttttcacaccaaacttgttatcagtgttcaa |
147 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
31726107 |
ttagaaacttgaggagcctttggaatctgtttcccaccaaagatgttatcagtgttcaa |
31726049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 31730237 - 31730169
Alignment:
| Q |
17 |
tcatgtgaagcaaccaaagttttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataa |
85 |
Q |
| |
|
||||| ||||||||||| | |||||||||| ||| ||||| |||||||| || ||||||| ||||||| |
|
|
| T |
31730237 |
tcatgagaagcaaccaaggccttagaaatctcaaatataagtctagcctcaaaagcatcacgagaataa |
31730169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 49 times since January 2019
Visitors: 3646