View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0556_low_1 (Length: 1002)
Name: NF0556_low_1
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 840; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 1 - 915
Target Start/End: Original strand, 48542575 - 48543477
Alignment:
| Q |
1 |
atccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatcccttaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542575 |
atccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatcccttaaat |
48542674 |
T |
|
| Q |
101 |
gggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtacagatagactcatgtttgagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542675 |
gggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtacagatagactcatgtttgagttt |
48542774 |
T |
|
| Q |
201 |
gctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48542775 |
gctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatcg |
48542874 |
T |
|
| Q |
301 |
cctagctcttgcctgcaggttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaacaaatttgattt |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48542875 |
cctagctcttgcctgcaagttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaacaaatttgattt |
48542974 |
T |
|
| Q |
401 |
aatttttaagaattagtcatcatgttgtagacatgataaatcaaatttttctagttttactgtatttcttgtacaaggacaagaatgtcctttggtttaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48542975 |
-----ttaagaattagtcatcatgttgtagacatgattaatcaaatttttctagttt-actgtatttcttgtacaaggacaagaatgtcctttggtttaa |
48543068 |
T |
|
| Q |
501 |
tggaacatttgtattctattatgatctccttggtttcaattgtgattaacttgttatatagaactaaaatataccactttttaaatctctcaagtggtat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48543069 |
tggaacatttgtattctattatgatctccttggtttcaattgtgattaacttgttatatagaactaaaatataccactttttaaatctctcaagtggtat |
48543168 |
T |
|
| Q |
601 |
aggttgtgaagctgaagaaggaggtttgatccctaccattaacaaattatctctacttttgagggctgcaacaaactaaactaatcaactaacatttgcc |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
48543169 |
aggttgtgaagctgaagaaggaggtttgatccctaccattaacaaattatctctacttttgagggctgcaacaaactaatc------actaacatttgcc |
48543262 |
T |
|
| Q |
701 |
aagaaaaagagaaacgaaaaccgtaaaaagatagcagtaattatctaaacatagacttgcaacatacatggatgatattcagataacaaacctgatggat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48543263 |
aagaaaaagagaaacgaaaaccgtaaaaagatagcagtaattatctaaacatagacttgcaacatacatggatgatattcagataacaaacctgatggat |
48543362 |
T |
|
| Q |
801 |
tggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacaccggtagtggtgggagaattgttgagtagctttgagattgaagaaaac |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
48543363 |
tggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacactggtagtggtgggagcattgttgagtagctttgagattgaagaaaac |
48543462 |
T |
|
| Q |
901 |
tgatggtgatgatgt |
915 |
Q |
| |
|
||||||||||||||| |
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|
| T |
48543463 |
tgatggtgatgatgt |
48543477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 9836635 - 9836248
Alignment:
| Q |
1 |
atccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatcccttaaat |
100 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||| |
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|
| T |
9836635 |
atccatgtagcattttctacttccatgggatttgacttgacataacgatgattaaaagtgcatccagaatgcatatcaactctgtggtcgtcccttaaat |
9836536 |
T |
|
| Q |
101 |
gggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtacagatagactcatgtttgagttt |
200 |
Q |
| |
|
| |||||||| | || ||||| || |||||||||||||||||||| ||||||||||| || || ||||| ||| |||| |||||||| ||||||||||| |
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|
| T |
9836535 |
gagcaacaagctgtgaaatatcaccgacaacagaacagtctgatccggcataagggcagttataaggtctgaagttacaaatagactcgtgtttgagttt |
9836436 |
T |
|
| Q |
201 |
gctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatca |
300 |
Q |
| |
|
||| |||| ||||||||||||| ||| |||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
9836435 |
gctgtaatagggaaatatctctggacagccaacagaggtgtatctgcaaggaagttcaagtgattctgctattttttccaatgctaaacaccgaatatcg |
9836336 |
T |
|
| Q |
301 |
cctagctcttgcctgcaggttggacatctgttgtgtacccttgtcttacaatttgaacaaagggtatgtccattgtgacactgcaaaa |
388 |
Q |
| |
|
|| || || || ||||| ||||| || |||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| |
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|
| T |
9836335 |
cccagttcctgtctgcaagttgggcacctgttgtgtaccctagtcttacaagttgaacatagggtatgcccattgtgacactgcaaaa |
9836248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 787 - 853
Target Start/End: Complemental strand, 9834231 - 9834165
Alignment:
| Q |
787 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattcaagaagatcatggacac |
853 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||| |||| |
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|
| T |
9834231 |
caaacctgatgaattggagggtacattgaattagtacaaacaggacattcaagaagctcatgaacac |
9834165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 14232564 - 14232530
Alignment:
| Q |
27 |
aggatttgatttgacataacgatggttaaaagtgc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14232564 |
aggatttgatttgacataacgatggttaaaagtgc |
14232530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 736867 - 736518
Alignment:
| Q |
1 |
atccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatcccttaaat |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || |||||||||||||| || |||||||| | ||||| || ||| ||| || ||||| |||| |
|
|
| T |
736867 |
atccaagtagcattctctacttcacgcggatttgacttcacataacgatggttgaatgtgcatcctgtgtgcatgtccaccttatgatcgtccctcaaat |
736768 |
T |
|
| Q |
101 |
gggcaacaaggtatggaatatttccaacaacagaacagtctgatccagcataagggcaattgtatggtctaaaggtacagatagactcatgtttgagttt |
200 |
Q |
| |
|
| ||||||||| | ||||| |||||| |||| || ||||||||||||||||| ||| ||||||||||||| | || || | |||||| || || || |
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|
| T |
736767 |
gtgcaacaaggaaattaatatcgccaacagcagagcactctgatccagcataaggacaagtgtatggtctaaaattgcatattgtctcatgcttcagctt |
736668 |
T |
|
| Q |
201 |
gctaaaatatggaaatatctctgaacaaccaagagatatgtatctacaaggaaattcaagtgattctgctattttctccaatgctaaacaccttatatca |
300 |
Q |
| |
|
||| | |||||||| || |||| ||| |||||||| |||| | || || || || |||||||| || | || |||| ||| | |||||| ||||| |
|
|
| T |
736667 |
gctgtagtatggaaagatttctggacatccaagagagtagtatttgcatggtaactcgagtgattcagcaaccttttccagtgccagacacctaatatct |
736568 |
T |
|
| Q |
301 |
cctagctcttgcctgcaggttggacatctgttgtgtacccttgtcttaca |
350 |
Q |
| |
|
|| |||||||| || ||||| ||||||| ||||| |||||||| ||||| |
|
|
| T |
736567 |
ccaagctcttgtctacaggtcggacatcgattgtgcacccttgttttaca |
736518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 836
Target Start/End: Complemental strand, 733108 - 733059
Alignment:
| Q |
787 |
caaacctgatggattggagggtacattgaattggtgcaaaccggacattc |
836 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
733108 |
caaacctgatgaattggaggatacattgaattggtacaaacaggacattc |
733059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 41633764 - 41633909
Alignment:
| Q |
28 |
ggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaaccccatggtcatcccttaaatgggcaacaaggtatggaatatttccaa |
127 |
Q |
| |
|
|||||||| || |||||||||||||| || |||||||| | ||||| || ||| ||| |||||||| ||||| ||||| ||| | | ||||| ||||| |
|
|
| T |
41633764 |
ggatttgacttcacataacgatggttgaatgtgcatccggtgtgcatgtccaccttatgatcatccctcaaatgagcaacgaggaaggaaatatctccaa |
41633863 |
T |
|
| Q |
128 |
caacagaacagtctgatccagcataagggcaattgtatggtctaaa |
173 |
Q |
| |
|
| ||||| ||||||||||||||||| ||| | || |||||||| |
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|
| T |
41633864 |
ctgtggaacactctgatccagcataaggacaactataaggtctaaa |
41633909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5037369 - 5037448
Alignment:
| Q |
1 |
atccaagtagcattttctacttccgtaggatttgatttgacataacgatggttaaaagtgcatccagaatgcatatcaac |
80 |
Q |
| |
|
||||| || |||||||| ||||| ||||||||||||||| |||||||| ||||||||||| ||| |||||| ||||| |
|
|
| T |
5037369 |
atccatgtggcattttcaacttcttgaggatttgatttgacgtaacgatgattaaaagtgcagccactatgcatgtcaac |
5037448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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