View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556_low_11 (Length: 354)
Name: NF0556_low_11
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 19345024 - 19344762
Alignment:
| Q |
1 |
taagataattgtgaaaattcaggtaagaatcattcaaagtagtgttgagttactgtgcttacttatagatctcctggctgcacaaaaccttcataaaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19345024 |
taagataattgtgaaaattcaggtaagaatcattcaaagtagttttgagttactgtgcttacttatagatctcctggctgcacaaaaccttcataaaatt |
19344925 |
T |
|
| Q |
101 |
tgcaaccataggctcaagtttacagtgtgtcgctgctatccccagctgtcgaagacctaatgccccgtgtctaacttcaactccatcatcctattcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19344924 |
tgcaaccataggctcaagtttacagtgtgtcgctgctatccccagctgccgaagacctaatgccccgtgtctaacttcaactccatcatcctattcaatg |
19344825 |
T |
|
| Q |
201 |
ccataatgctatatatgtttaaccaaaaacaggagtgataaatcatcatttatgggaagtaat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19344824 |
ccataatgctatatatgtttaaccaaaaacaggagtgataaatcatcaattatgggaagtaat |
19344762 |
T |
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