View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0556_low_13 (Length: 270)

Name: NF0556_low_13
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0556_low_13
NF0556_low_13
[»] chr5 (7 HSPs)
chr5 (45-187)||(29572683-29572825)
chr5 (45-187)||(29574060-29574202)
chr5 (45-187)||(29575437-29575579)
chr5 (45-187)||(29576814-29576956)
chr5 (45-187)||(29578191-29578333)
chr5 (45-187)||(29579568-29579710)
chr5 (80-187)||(23923048-23923155)
[»] chr7 (4 HSPs)
chr7 (78-183)||(23054802-23054907)
chr7 (96-183)||(47923910-47923997)
chr7 (86-187)||(5865312-5865413)
chr7 (125-186)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (115-183)||(4422889-4422957)
chr1 (125-153)||(48265586-48265614)
[»] chr3 (3 HSPs)
chr3 (76-173)||(9509949-9510046)
chr3 (76-173)||(9517924-9518021)
chr3 (125-186)||(25132349-25132410)
[»] chr6 (1 HSPs)
chr6 (86-187)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 29572825 - 29572683
Alignment:
Q  45 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 144  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29572825 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29572726  T
Q  145 ctcctcccataaccataacctcctcctccattgccaagcctca 187  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  29572725 ctcctcccatatccacaacatccttctccattgccaagcctca 29572683  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 29574202 - 29574060
Alignment:
Q  45 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 144  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29574202 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29574103  T
Q  145 ctcctcccataaccataacctcctcctccattgccaagcctca 187  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  29574102 ctcctcccatatccacaacatccttctccattgccaagcctca 29574060  T

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Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 29575579 - 29575437
Alignment:
Q  45 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 144  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29575579 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29575480  T
Q  145 ctcctcccataaccataacctcctcctccattgccaagcctca 187  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  29575479 ctcctcccatatccacaacatccttctccattgccaagcctca 29575437  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 29576956 - 29576814
Alignment:
Q  45 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 144  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29576956 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29576857  T
Q  145 ctcctcccataaccataacctcctcctccattgccaagcctca 187  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  29576856 ctcctcccatatccacaacatccttctccattgccaagcctca 29576814  T

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Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 29578333 - 29578191
Alignment:
Q  45 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 144  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29578333 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29578234  T
Q  145 ctcctcccataaccataacctcctcctccattgccaagcctca 187  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  29578233 ctcctcccatatccacaacatccttctccattgccaagcctca 29578191  T

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Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 29579710 - 29579568
Alignment:
Q  45 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 144  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29579710 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29579611  T
Q  145 ctcctcccataaccataacctcctcctccattgccaagcctca 187  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||    
T  29579610 ctcctcccatatccacaacatccttctccattgccaagcctca 29579568  T

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Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 23923048 - 23923155
Alignment:
Q  80 tgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgcc 179  Q
    ||||| ||||||||| |||||||||||| |||||||||| |||  |||||||||||||||| |||||||||||| | ||| |||||||||||||| ||||    
T  23923048 tgatcagaaacattaacctgcaaaataacgttagaaagtaacaacctacactccgctaacatctcctcctcccacacccacaacctcctcctccactgcc 23923147  T
Q  180 aagcctca 187  Q
    ||||||||    
T  23923148 aagcctca 23923155  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 23054907 - 23054802
Alignment:
Q  78 agtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattg 177  Q
    ||||||| |||| || | |||||| ||||| |||||||||| | || |||||||||||||||| ||  |||||||| | ||| |||||||||||||| ||    
T  23054907 agtgatccgaaatatcaacctgcataataaagttagaaagtaatatcctacactccgctaacatcttttcctcccacacccacaacctcctcctccactg 23054808  T
Q  178 ccaagc 183  Q
    ||||||    
T  23054807 ccaagc 23054802  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 47923910 - 47923997
Alignment:
Q  96 cctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 183  Q
    ||||||||| || |||||||||| || |  |||||||| |||||| ||| |||||||| | ||| |||||||||||||| ||||||||    
T  47923910 cctgcaaaacaacgttagaaagtaacgtcatacactcctctaacatctcttcctcccacacccacaacctcctcctccactgccaagc 47923997  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 5865312 - 5865413
Alignment:
Q  86 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 185  Q
    |||||||||  ||||||| |||  |||| |||| |||  |||||||||||||||||||||||||| ||   ||| ||| ||| |||||| ||||| ||||    
T  5865312 gaaacattaatctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcctcctctcacgcccacaacatccgcctccactgccacgcct 5865411  T
Q  186 ca 187  Q
    ||    
T  5865412 ca 5865413  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 22819613 - 22819552
Alignment:
Q  125 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 186  Q
    ||||||||| |||||||||||||||||||   ||| |||||||| | ||||||||| |||||    
T  22819613 ctacactcccctaacaactcctcctcccaggcccacaacctcctacgccattgccacgcctc 22819552  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 4422889 - 4422957
Alignment:
Q  115 aagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 183  Q
    |||| |||| |||||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||    
T  4422889 aagtaacatcctacactccgctaacaactcttcctctcatacccacaacctcctcctccactgccaagc 4422957  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 48265614 - 48265586
Alignment:
Q  125 ctacactccgctaacaactcctcctccca 153  Q
    |||||||||||||||||||||||||||||    
T  48265614 ctacactccgctaacaactcctcctccca 48265586  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 9509949 - 9510046
Alignment:
Q  76 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 173  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9509949 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9510046  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 9517924 - 9518021
Alignment:
Q  76 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 173  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9517924 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9518021  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 25132349 - 25132410
Alignment:
Q  125 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 186  Q
    ||||||||| |||  |||||||||||||| | ||| |||||||| ||||||| |||||||||    
T  25132349 ctacactcccctagtaactcctcctcccacacccacaacctccttctccatttccaagcctc 25132410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 900789 - 900688
Alignment:
Q  86 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 185  Q
    ||||||||  |||||||| |||  |||| |||| |||  |||||||||||||||||||| ||||||||   ||| ||||||||| | || ||||| ||||    
T  900789 gaaacattgacctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcatcctcccacgcccacaacctcctctttcactgccacgcct 900690  T
Q  186 ca 187  Q
    ||    
T  900689 ca 900688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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