View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556_low_15 (Length: 261)
Name: NF0556_low_15
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 261
Target Start/End: Original strand, 9921375 - 9921608
Alignment:
| Q |
28 |
atggacatcatcaccactgaggctgttgataaatgcaatgaagagagtcgaaagatcattagtggtgaggatataatacgggccatgggtaggttagggt |
127 |
Q |
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| T |
9921375 |
atgggcatcatcaccactgaggctgttgagaaatgcaatgaagagagtcgaaagatcattagcggtgaagatataatacgggccatgggtaggttagggt |
9921474 |
T |
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| Q |
128 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccatgaggctcaattcagtggcatgtcaactgcttgtggattcaacatgga |
227 |
Q |
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| T |
9921475 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccatgaggctcaattcagtggcatgtcaactgcttgtggattcaacatgga |
9921574 |
T |
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| Q |
228 |
tggggtgggtgctggtggctcgagcaggggtaat |
261 |
Q |
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| T |
9921575 |
tgggtcgggtactggtggctcgagcagtggtaat |
9921608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 9911315 - 9911448
Alignment:
| Q |
45 |
tgaggctgttgataaatgcaatgaagagagtcgaaagatcattagtggtgaggatataatac-gggccatgggtaggttagggtttgaggactatgttgg |
143 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
9911315 |
tgaggttgttgataaatgcaatgaagagagtcgaaagatcattagtggtaaagatttaaatctgggccatgggtaggttagggtttgaggactatgttgg |
9911414 |
T |
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| Q |
144 |
tcctctatctcttctcctccaaaactatcgcaac |
177 |
Q |
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| T |
9911415 |
tcctctatctcttctcctccaaaactatcgcaac |
9911448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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