View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0556_low_4 (Length: 470)
Name: NF0556_low_4
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 27 - 442
Target Start/End: Complemental strand, 46061801 - 46061390
Alignment:
| Q |
27 |
gcatgtaattgcatggtttgtcctctttaattatgtgaaacaataaattatttgtccacaaagcaacaagataatcacannnnnnnggtttaacaatctg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46061801 |
gcatgtaattgcatggtttgtcctctttaattatgtgaaacaataaattatttgtccacaaagcaacaagataatcacatttttttggtttaacaatctg |
46061702 |
T |
|
| Q |
127 |
cctctcaatatatcttggaataaacttcttaagatcaatataacatggtatgtaaaaagcttttattttgcaagttaatttggacagcttatctgaacat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46061701 |
cctctcaatatatcttggaataaacttcttaagatcaatatatcatggtatgtaaaaagcttttattttgcaagttaatttggacagcttatctgaacat |
46061602 |
T |
|
| Q |
227 |
ttatatatgaaaattttcttttgatgcagtcagtaagtgcagcaaaggcagatgaattcaccctcaagaagaacatcttatctatctttgtttgatttat |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46061601 |
ttat----gaaaattttcttttgatgcagtcagtaagtgcagcaaaggcagatgaattcaccctcaagaagaacatcttatctatctttgtttgatttat |
46061506 |
T |
|
| Q |
327 |
gatgatataatagttgagcctttaagttctatagggagatatgtgtaattcctgagtgtgcaagtgttatcacccttatgaccatgccctctaaaatatg |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46061505 |
gatgatataatagttgagcctttaagttctatagggagatatgtgtaattcctgagtgtgcaagtgttatcacccttatgaccatgccctctaaaatatg |
46061406 |
T |
|
| Q |
427 |
tagtcttttgcctacg |
442 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46061405 |
tagtcttttgcctacg |
46061390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 384 times since January 2019
Visitors: 3650