View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0556_low_9 (Length: 370)
Name: NF0556_low_9
Description: NF0556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0556_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26315816 - 26315575
Alignment:
| Q |
1 |
aatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccatcatgccattgaactatctcatggtaagcct |
100 |
Q |
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| T |
26315816 |
aatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccaccatgccattgaactatctcatggtaagcct |
26315717 |
T |
|
| Q |
101 |
ttgatttactcgaacatttgtgttttatgctctannnnnnnncaaatgatatatctctttgccccctctaatctattc-----taatataatataatata |
195 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
26315716 |
ttgatttactcgaacatttgtgttttatgctctattttttttcaaatgatatatctttttgccccctctaatctattctaatataatataatataatata |
26315617 |
T |
|
| Q |
196 |
atctacattgtgtttatatgacataaatattatctaaccctc |
237 |
Q |
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| T |
26315616 |
atctacattgtgtttatatgacataaatattaactaaccctc |
26315575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 43110924 - 43110799
Alignment:
| Q |
1 |
aatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccatcatgccattgaactatctcatggtaagcct |
100 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||| |||||||| |||| ||||||||||||| | |
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| T |
43110924 |
aatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaacttgttcccaccatgccatggaacaatctcatggtaagatt |
43110825 |
T |
|
| Q |
101 |
ttgatttactcgaacatttgtgtttt |
126 |
Q |
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| T |
43110824 |
tttatatgttcgaagatttgtgtttt |
43110799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 5268934 - 5269026
Alignment:
| Q |
3 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccatcatgccattgaactatctcatggta |
95 |
Q |
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| T |
5268934 |
tgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaattctctcatggta |
5269026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 5249699 - 5249791
Alignment:
| Q |
3 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccatcatgccattgaactatctcatggta |
95 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||| ||| |||||| ||||| | ||| | |||||||||| |
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|
| T |
5249699 |
tgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactatgccttggaattctctcatggta |
5249791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 5276820 - 5276756
Alignment:
| Q |
3 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcc |
67 |
Q |
| |
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|||||||| ||||| ||| | |||||||||| ||||||| ||||||||||||||||||| |||| |
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| T |
5276820 |
tgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcc |
5276756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 19569168 - 19569227
Alignment:
| Q |
3 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
62 |
Q |
| |
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||||| || ||||| |||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
19569168 |
tgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactc |
19569227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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